C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cyclic nucleotide gated channel beta 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120044 Cngb1-002 ENSMUSG00000031789 10090 - 8:95240981-95281590 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENSMUST00000120044
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENSMUST00000120044 0.113±0.00 0.263±0.01 0.015±0.00 0.094±0.02 0.077±0.03 0.062±0.00 0.041±0.02 0.098±0.07 0.055±0.03 0.244±0.06 0.032±0.00 0.293±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004S0 CIL_0004S0_0002 CGP 8:95099832-95306585
CIL_0008Z0 CIL_0008Z0_0002 VISTA 8:95126508-95728314
CIL_0004RZ CIL_0004RZ_0002 CGP 8:95239045-95326323

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005222 IBA intracellular cAMP activated cation channel activity
GO:0005223 IBA intracellular cGMP activated cation channel activity
GO:0005249 IBA voltage-gated potassium channel activity
GO:0005887 IBA integral component of plasma membrane
GO:0007602 IMP phototransduction
GO:0007603 IBA phototransduction, visible light
GO:0007608 IMP sensory perception of smell
GO:0016020 IDA membrane
GO:0030553 IBA cGMP binding
GO:0033365 IMP protein localization to organelle
GO:0042391 IBA regulation of membrane potential
GO:0043855 IMP cyclic nucleotide-gated ion channel activity
GO:0045494 IMP photoreceptor cell maintenance
GO:0071805 IBA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000251102 CNGB1-001 protein_coding Homo_sapiens 0 2307
ENST00000564448 CNGB1-003 protein_coding Homo_sapiens 0 2307
ENST00000565942 CNGB1-008 protein_coding Homo_sapiens 0 348
ENST00000569643 CNGB1-009 retained_intron Homo_sapiens 0 848

Loading