C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: telomeric repeat binding factor 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031921 Terf2 10090 - 8:107069400-107096547 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000068388 Terf2-003 107069928-107096514 protein_coding
  ENSMUST00000068421 Terf2-201 107069402-107096545 protein_coding
  ENSMUST00000116425 Terf2-002 107075517-107096547 protein_coding
  ENSMUST00000133925 Terf2-001 107069400-107096545 protein_coding
  ENSMUST00000136178 Terf2-006 107079437-107083217 retained_intron
  ENSMUST00000141205 Terf2-005 107076319-107079875 retained_intron
  ENSMUST00000142616 Terf2-004 107069402-107096190 nonsense_mediated_decay
  ENSMUST00000155834 Terf2-007 107079428-107081441 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000068388ENSMUST00000068421ENSMUST00000116425ENSMUST00000133925ENSMUST00000142616
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000068388 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.634±0.00 N/A 4.957±0.00
ENSMUST00000068421 1.104±0.00 1.852±0.73 3.059±1.05 5.181±2.18 1.712±0.00 1.731±0.53 1.128±0.53 2.320±0.84 1.615±1.44 2.397±0.04 2.023±0.40 2.428±0.81 2.716±0.84 3.146±0.98
ENSMUST00000116425 1.171±0.28 1.974±0.40 1.820±0.00 3.230±0.21 1.380±0.38 0.994±0.40 N/A 1.360±0.73 1.483±1.16 1.561±0.44 0.844±0.02 1.900±1.06 3.900±1.89 N/A
ENSMUST00000133925 2.197±0.99 1.444±0.55 2.159±0.60 6.183±0.84 1.614±0.54 0.905±0.12 0.944±0.07 1.402±0.73 1.535±0.88 2.768±0.75 1.575±0.77 3.536±1.45 4.726±2.06 1.589±0.29
ENSMUST00000142616 N/A 1.517±0.00 N/A 1.844±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.820±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KB CIL_0008KB_0002 VISTA 8:107038845-107639359
CIL_0004I8 CIL_0004I8_0002 CGP 8:107061484-107096547
CIL_0007FT CIL_0007FT_0002 CGP 8:107069400-107187470

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000723 IMP telomere maintenance
GO:0000781 ISS chromosome, telomeric region
GO:0000783 IBA nuclear telomere cap complex
GO:0000784 IDA nuclear chromosome, telomeric region
GO:0001673 IDA male germ cell nucleus
GO:0001701 IMP in utero embryonic development
GO:0003682 IEA chromatin binding
GO:0003691 IMP double-stranded telomeric DNA binding
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0007049 IEA cell cycle
GO:0008022 IEA protein C-terminus binding
GO:0010834 IEA telomere maintenance via telomere shortening
GO:0016233 IEA telomere capping
GO:0030870 IEA Mre11 complex
GO:0031627 IEA telomeric loop formation
GO:0031848 IDA protection from non-homologous end joining at telomere
GO:0032205 IEA negative regulation of telomere maintenance
GO:0032206 IDA positive regulation of telomere maintenance
GO:0042162 IEA telomeric DNA binding
GO:0042803 IEA protein homodimerization activity
GO:0070198 IEA protein localization to chromosome, telomeric region

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039302 terfa telomeric repeat binding factor a protein_coding Danio_rerio
ENSG00000132604 TERF2 telomeric repeat binding factor 2 protein_coding Homo_sapiens

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