C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: telomeric repeat binding factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000133925 Terf2-001 ENSMUSG00000031921 10090 - 8:107069400-107096545 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000133925
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000133925 2.197±0.99 1.444±0.55 2.159±0.60 6.183±0.84 1.614±0.54 0.905±0.12 0.944±0.07 1.402±0.73 1.535±0.88 2.768±0.75 1.575±0.77 3.536±1.45 4.726±2.06 1.589±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KB CIL_0008KB_0002 VISTA 8:107038845-107639359
CIL_0004I8 CIL_0004I8_0002 CGP 8:107061484-107096547
CIL_0007FT CIL_0007FT_0002 CGP 8:107069400-107187470

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000723 IMP telomere maintenance
GO:0000783 IBA nuclear telomere cap complex
GO:0000784 IDA nuclear chromosome, telomeric region
GO:0001673 IDA male germ cell nucleus
GO:0001701 IMP in utero embryonic development
GO:0003682 IEA chromatin binding
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0008022 IEA protein C-terminus binding
GO:0010834 IEA telomere maintenance via telomere shortening
GO:0016233 IEA telomere capping
GO:0030870 IEA Mre11 complex
GO:0031627 IEA telomeric loop formation
GO:0031848 IDA protection from non-homologous end joining at telomere
GO:0032205 IEA negative regulation of telomere maintenance
GO:0032206 IDA positive regulation of telomere maintenance
GO:0042162 IEA telomeric DNA binding
GO:0042803 IEA protein homodimerization activity
GO:0070198 IEA protein localization to chromosome, telomeric region

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000254942 TERF2-001 protein_coding Homo_sapiens 0 1847
ENST00000564982 TERF2-009 nonsense_mediated_decay Homo_sapiens 0 348
ENST00000566051 TERF2-008 protein_coding Homo_sapiens 0 246
ENST00000566257 TERF2-013 protein_coding Homo_sapiens 0 676
ENST00000566750 TERF2-006 protein_coding Homo_sapiens 0 965
ENST00000567130 TERF2-010 retained_intron Homo_sapiens 0 246
ENST00000567296 TERF2-002 protein_coding Homo_sapiens 0 1085
ENST00000567841 TERF2-003 protein_coding Homo_sapiens 0 460
ENST00000569280 TERF2-005 nonsense_mediated_decay Homo_sapiens 0 593
ENST00000569584 TERF2-011 protein_coding Homo_sapiens 0 645
ENST00000569611 TERF2-004 processed_transcript Homo_sapiens 0 680

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