C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: telomeric repeat binding factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000116425 Terf2-002 ENSMUSG00000031921 10090 - 8:107075517-107096547 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaENSMUST00000116425
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000116425 1.171±0.28 1.974±0.40 1.820±0.00 3.230±0.21 1.380±0.38 0.994±0.40 1.360±0.73 1.483±1.16 1.561±0.44 0.844±0.02 1.900±1.06 3.900±1.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KB CIL_0008KB_0002 VISTA 8:107038845-107639359
CIL_0004I8 CIL_0004I8_0002 CGP 8:107061484-107096547
CIL_0007FT CIL_0007FT_0002 CGP 8:107069400-107187470

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000723 ISS telomere maintenance
GO:0000781 ISS chromosome, telomeric region
GO:0000783 IBA nuclear telomere cap complex
GO:0000784 IDA nuclear chromosome, telomeric region
GO:0001673 IDA male germ cell nucleus
GO:0001701 IMP in utero embryonic development
GO:0003682 IEA chromatin binding
GO:0003691 IMP double-stranded telomeric DNA binding
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0007049 IEA cell cycle
GO:0031848 IDA protection from non-homologous end joining at telomere
GO:0032206 IDA positive regulation of telomere maintenance
GO:0042162 ISS telomeric DNA binding
GO:0042803 IPI protein homodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000254942 TERF2-001 protein_coding Homo_sapiens 0 1491
ENST00000564982 TERF2-009 nonsense_mediated_decay Homo_sapiens 0 348
ENST00000566257 TERF2-013 protein_coding Homo_sapiens 0 669
ENST00000566750 TERF2-006 protein_coding Homo_sapiens 0 955
ENST00000567130 TERF2-010 retained_intron Homo_sapiens 2e-39 165
ENST00000567296 TERF2-002 protein_coding Homo_sapiens 0 1085
ENST00000567841 TERF2-003 protein_coding Homo_sapiens 0 460
ENST00000569280 TERF2-005 nonsense_mediated_decay Homo_sapiens 0 593
ENST00000569584 TERF2-011 protein_coding Homo_sapiens 0 813
ENST00000569611 TERF2-004 processed_transcript Homo_sapiens 0 680

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