C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: melanoma cell adhesion molecule
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032135 Mcam 10090 + 9:44134469-44142727 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000034650 Mcam-001 44134562-44142727 protein_coding
  ENSMUST00000098852 Mcam-002 44134658-44142724 protein_coding
  ENSMUST00000132490 Mcam-004 44136861-44139682 retained_intron
  ENSMUST00000147836 Mcam-005 44136544-44137272 protein_coding
  ENSMUST00000149241 Mcam-003 44134469-44138934 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034650ENSMUST00000098852
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034650 80.152±24.89 10.419±4.21 44.245±6.83 6.649±2.34 29.201±8.08 9.673±1.19 14.269±0.81 8.177±1.07 3.393±2.46 61.678±4.42 5.890±1.30 27.287±3.46 9.786±3.67 3.274±1.31
ENSMUST00000098852 48.079±17.52 9.625±3.75 45.751±6.48 1.558±0.60 24.191±2.29 15.432±1.58 5.491±1.13 2.754±0.34 0.984±0.32 38.422±6.95 3.068±0.62 31.005±4.76 4.700±3.02 1.693±0.65

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003094 IEA glomerular filtration
GO:0005615 IEA extracellular space
GO:0005634 IEA nucleus
GO:0005886 ISO plasma membrane
GO:0005925 IEA focal adhesion
GO:0007155 ISO cell adhesion
GO:0007157 ISO heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0009897 IEA external side of plasma membrane
GO:0016021 IEA integral component of membrane
GO:0030335 IEA positive regulation of cell migration
GO:0061042 IEA vascular wound healing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005368 mcamb melanoma cell adhesion molecule b protein_coding Danio_rerio
ENSDARG00000035158 MCAM (2 of 3) melanoma cell adhesion molecule protein_coding Danio_rerio
ENSDARG00000089643 MCAM (3 of 3) melanoma cell adhesion molecule protein_coding Danio_rerio
ENSG00000076706 MCAM melanoma cell adhesion molecule protein_coding Homo_sapiens

Loading