C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: melanoma cell adhesion molecule
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000076706 MCAM 9606 - 11:119308529-119321521 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264036 MCAM-001 119308529-119317116 protein_coding
  ENST00000524940 MCAM-005 119309887-119311118 processed_transcript
  ENST00000525555 MCAM-009 119314870-119317130 processed_transcript
  ENST00000525586 MCAM-002 119308986-119318377 retained_intron
  ENST00000526190 MCAM-007 119314722-119317130 retained_intron
  ENST00000526992 MCAM-018 119314990-119315820 processed_transcript
  ENST00000528502 MCAM-011 119314692-119317130 processed_transcript
  ENST00000528533 MCAM-003 119308972-119317130 retained_intron
  ENST00000528976 MCAM-016 119309987-119311381 processed_transcript
  ENST00000529257 MCAM-017 119314502-119316066 processed_transcript
  ENST00000529295 MCAM-013 119314505-119316842 processed_transcript
  ENST00000529686 MCAM-010 119314694-119317130 processed_transcript
  ENST00000530006 MCAM-006 119314616-119317129 retained_intron
  ENST00000530144 MCAM-014 119314893-119321521 processed_transcript
  ENST00000530706 MCAM-012 119312872-119317130 processed_transcript
  ENST00000530937 MCAM-008 119314685-119317130 retained_intron
  ENST00000534522 MCAM-015 119314887-119318891 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264036ENST00000528533
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264036 126.097±0.00 84.315±0.00 0.423±0.00 16.583±13.01 145.454±132.30 40.607±33.92 13.980±9.89 11.341±10.76 16.244±14.06 72.132±62.26 10.787±6.71 27.018±15.24 114.487±23.21 37.284±34.24
ENST00000528533 N/A N/A N/A 6.130±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 12.913±0.00 1.335±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000220 CIL_000220_0002 CGP 11:119206042-119321521
CIL_000221 CIL_000221_0002 CGP 11:119308529-119337313

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003094 IEP glomerular filtration
GO:0005515 IEA protein binding
GO:0005615 IEA extracellular space
GO:0005634 IEA nucleus
GO:0005886 NAS plasma membrane
GO:0005925 IDA focal adhesion
GO:0007155 IEA cell adhesion
GO:0009653 TAS anatomical structure morphogenesis
GO:0009897 IDA external side of plasma membrane
GO:0016021 IEA integral component of membrane
GO:0030335 IEA positive regulation of cell migration
GO:0061042 IEP vascular wound healing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005368 mcamb melanoma cell adhesion molecule b protein_coding Danio_rerio
ENSDARG00000035158 MCAM (2 of 3) melanoma cell adhesion molecule protein_coding Danio_rerio
ENSDARG00000089643 MCAM (3 of 3) melanoma cell adhesion molecule protein_coding Danio_rerio
ENSMUSG00000032135 Mcam melanoma cell adhesion molecule protein_coding Mus_musculus

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