C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: proline-serine-threonine phosphatase-interacting protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032322 Pstpip1 10090 + 9:56089962-56128888 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000059206 Pstpip1-001 56089962-56128888 protein_coding
  ENSMUST00000132800 Pstpip1-006 56123055-56125992 retained_intron
  ENSMUST00000135103 Pstpip1-005 56122090-56123757 retained_intron
  ENSMUST00000138646 Pstpip1-003 56089976-56128872 retained_intron
  ENSMUST00000142894 Pstpip1-007 56123055-56124047 retained_intron
  ENSMUST00000144638 Pstpip1-004 56120287-56125933 processed_transcript
  ENSMUST00000147360 Pstpip1-002 56089976-56128876 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000059206ENSMUST00000132800ENSMUST00000135103ENSMUST00000138646ENSMUST00000142894ENSMUST00000144638ENSMUST00000147360
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000059206 1.532±0.26 0.578±0.33 2.552±0.18 0.290±0.15 7.429±3.50 1.729±0.67 0.687±0.45 0.289±0.11 2.113±2.02 3.616±0.20 0.326±0.23 1.747±0.50 29.768±25.01 2.427±2.22
ENSMUST00000132800 N/A 0.639±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.076±0.00 N/A N/A
ENSMUST00000135103 N/A N/A N/A 0.154±0.00 N/A N/A 0.331±0.00 0.273±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000138646 0.452±0.08 0.187±0.00 0.624±0.00 0.210±0.13 1.113±0.13 N/A 0.133±0.00 0.147±0.03 0.609±0.26 0.909±0.33 0.110±0.06 0.331±0.15 2.205±0.90 N/A
ENSMUST00000142894 N/A N/A N/A N/A N/A 1.280±0.00 N/A N/A 0.176±0.06 N/A N/A N/A N/A N/A
ENSMUST00000144638 N/A N/A N/A 2.481±0.00 N/A N/A N/A N/A N/A N/A N/A 4.767±0.00 89.834±27.90 5.980±0.00
ENSMUST00000147360 0.565±0.00 0.157±0.00 N/A N/A N/A 0.450±0.01 N/A 0.395±0.00 0.321±0.25 N/A 0.096±0.01 0.295±0.08 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000246 CIL_000246_0002 CGP 9:56041845-56128888
CIL_0003NQ CIL_0003NQ_0003 CGP 9:56089962-56161070

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0003779 IDA actin binding
GO:0005515 IPI protein binding
GO:0005826 IDA actomyosin contractile ring
GO:0006897 IEA endocytosis
GO:0006954 IEA inflammatory response
GO:0007155 IEA cell adhesion
GO:0016020 IEA membrane
GO:0019903 IDA protein phosphatase binding
GO:0032154 IDA cleavage furrow
GO:0042995 IEA cell projection
GO:0045087 IEA innate immune response

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053568 pstpip1b proline-serine-threonine phosphatase interacting protein 1b protein_coding Danio_rerio
ENSDARG00000060860 pstpip1a proline-serine-threonine phosphatase interacting protein 1a protein_coding Danio_rerio
ENSG00000140368 PSTPIP1 proline-serine-threonine phosphatase interacting protein 1 protein_coding Homo_sapiens

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