C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proline-serine-threonine phosphatase-interacting protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000059206 Pstpip1-001 ENSMUSG00000032322 10090 + 9:56089962-56128888 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000059206
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000059206 1.532±0.26 0.578±0.33 2.552±0.18 0.290±0.15 7.429±3.50 1.729±0.67 0.687±0.45 0.289±0.11 2.113±2.02 3.616±0.20 0.326±0.23 1.747±0.50 29.768±25.01 2.427±2.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000246 CIL_000246_0002 CGP 9:56041845-56128888
CIL_0003NQ CIL_0003NQ_0003 CGP 9:56089962-56161070

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0003779 IDA actin binding
GO:0005515 IPI protein binding
GO:0005826 IDA actomyosin contractile ring
GO:0006897 IEA endocytosis
GO:0006954 IEA inflammatory response
GO:0007155 IEA cell adhesion
GO:0016020 IEA membrane
GO:0019903 IDA protein phosphatase binding
GO:0032154 IDA cleavage furrow
GO:0042995 IEA cell projection
GO:0045087 IEA innate immune response

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000379595 PSTPIP1-002 protein_coding Homo_sapiens 0 1500
ENST00000557995 PSTPIP1-011 processed_transcript Homo_sapiens 0 789
ENST00000558012 PSTPIP1-001 protein_coding Homo_sapiens 0 1544
ENST00000558870 PSTPIP1-010 protein_coding Homo_sapiens 0 331
ENST00000559295 PSTPIP1-009 protein_coding Homo_sapiens 0 924
ENST00000559750 PSTPIP1-006 nonsense_mediated_decay Homo_sapiens 0 649
ENST00000559785 PSTPIP1-003 nonsense_mediated_decay Homo_sapiens 0 1018
ENST00000559795 PSTPIP1-005 retained_intron Homo_sapiens 0 470
ENST00000559856 PSTPIP1-015 protein_coding Homo_sapiens 0 490
ENST00000560064 PSTPIP1-016 retained_intron Homo_sapiens 0 287
ENST00000560223 PSTPIP1-004 nonsense_mediated_decay Homo_sapiens 0 1277
ENST00000560377 PSTPIP1-007 retained_intron Homo_sapiens 0 490
ENST00000561315 PSTPIP1-014 retained_intron Homo_sapiens 0 425

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