C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: high mobility group 20A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032329 Hmg20a 10090 + 9:56418644-56496884 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000034879 Hmg20a-201 56418644-56496884 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034879
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034879 14.840±4.24 17.886±2.88 12.183±1.08 27.384±5.64 12.670±4.62 9.962±1.52 7.512±0.39 11.171±1.35 5.368±1.97 15.250±1.08 3.383±0.67 25.005±6.78 9.677±0.96 3.248±0.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001UO CIL_0001UO_0002 CGP 9:56201126-56496884
CIL_0003SZ CIL_0003SZ_0002 CGP 9:56418644-56685253

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0016568 IMP chromatin modification
GO:0045665 IDA negative regulation of neuron differentiation
GO:0046982 IPI protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031198 hmg20a high-mobility group 20A protein_coding Danio_rerio
ENSG00000140382 HMG20A high mobility group 20A protein_coding Homo_sapiens

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