C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: high mobility group 20A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000140382 HMG20A 9606 + 15:77420412-77485607 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000336216 HMG20A-001 77420651-77485607 protein_coding
  ENST00000381714 HMG20A-002 77420674-77485603 protein_coding
  ENST00000558176 HMG20A-011 77420921-77467274 protein_coding
  ENST00000558288 HMG20A-006 77482050-77485607 retained_intron
  ENST00000558651 HMG20A-012 77420722-77467284 protein_coding
  ENST00000558845 HMG20A-009 77478293-77479604 protein_coding
  ENST00000559035 HMG20A-014 77420902-77471003 nonsense_mediated_decay
  ENST00000559099 HMG20A-015 77421011-77470929 protein_coding
  ENST00000559728 HMG20A-008 77478123-77483419 retained_intron
  ENST00000560498 HMG20A-007 77420412-77467158 protein_coding
  ENST00000560867 HMG20A-013 77458217-77470946 protein_coding
  ENST00000560986 HMG20A-010 77420935-77464823 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000336216ENST00000381714ENST00000558288ENST00000559728ENST00000560867
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000336216 2.147±0.00 N/A 1.436±0.00 2.177±0.00 0.811±0.25 0.253±0.00 1.854±0.00 0.851±0.00 N/A 0.405±0.23 2.156±1.12 2.556±0.22 3.660±0.00
ENST00000381714 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.215±0.00 N/A 2.773±0.00
ENST00000558288 N/A N/A 0.725±0.00 0.973±0.01 N/A 0.298±0.00 N/A N/A 0.755±0.00 N/A 0.635±0.00 N/A N/A
ENST00000559728 4.813±0.00 1.680±0.00 N/A 3.222±0.00 2.410±0.00 1.152±0.00 1.762±0.00 3.208±0.74 2.929±0.00 1.150±0.00 3.301±0.00 N/A N/A
ENST00000560867 N/A 2.492±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001UO CIL_0001UO_0001 CGP 15:77100656-77485607
CIL_0003SZ CIL_0003SZ_0001 CGP 15:77420412-77820900

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 NAS DNA binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 NAS nucleus
GO:0006325 NAS chromatin organization
GO:0006351 IEA transcription, DNA-templated
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0016568 IEA chromatin modification
GO:0045665 IEA negative regulation of neuron differentiation
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031198 hmg20a high-mobility group 20A protein_coding Danio_rerio
ENSMUSG00000032329 Hmg20a high mobility group 20A protein_coding Mus_musculus

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