C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003SZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000140382-ENSG00000169783 CGP 9606 15:77420412-77820900
GeneTranscriptPositionBiotype
ENSG00000140382 (HMG20A)
high mobility group 20A 		ENST00000336216 (HMG20A-001) 77420651-77485607 protein_coding
ENST00000381714 (HMG20A-002) 77420674-77485603 protein_coding
ENST00000558176 (HMG20A-011) 77420921-77467274 protein_coding
ENST00000558288 (HMG20A-006) 77482050-77485607 retained_intron
ENST00000558651 (HMG20A-012) 77420722-77467284 protein_coding
ENST00000558845 (HMG20A-009) 77478293-77479604 protein_coding
ENST00000559035 (HMG20A-014) 77420902-77471003 nonsense_mediated_decay
ENST00000559099 (HMG20A-015) 77421011-77470929 protein_coding
ENST00000559728 (HMG20A-008) 77478123-77483419 retained_intron
ENST00000560498 (HMG20A-007) 77420412-77467158 protein_coding
ENST00000560867 (HMG20A-013) 77458217-77470946 protein_coding
ENST00000560986 (HMG20A-010) 77420935-77464823 retained_intron
ENSG00000169783 (LINGO1)
leucine rich repeat and Ig domain containing 1 		ENST00000355300 (LINGO1-001) 77613027-77632490 protein_coding
ENST00000557798 (LINGO1-003) 77614944-77634353 protein_coding
ENST00000559893 (LINGO1-004) 77615722-77696495 protein_coding
ENST00000561030 (LINGO1-002) 77613670-77696148 protein_coding
ENST00000561686 (LINGO1-013) 77615353-77787014 protein_coding
ENST00000562933 (LINGO1-010) 77615854-77820332 protein_coding
ENST00000563316 (LINGO1-007) 77615877-77820871 protein_coding
ENST00000564066 (LINGO1-011) 77677156-77820224 processed_transcript
ENST00000564472 (LINGO1-006) 77615782-77720751 protein_coding
ENST00000566711 (LINGO1-014) 77615673-77819452 protein_coding
ENST00000567605 (LINGO1-012) 77677107-77819528 processed_transcript
ENST00000567726 (LINGO1-005) 77615513-77707507 protein_coding
ENST00000568951 (LINGO1-009) 77677109-77820854 processed_transcript
ENST00000570216 (LINGO1-008) 77615833-77820900 protein_coding
ENSG00000259213 (CTD-2071N1.1)
 ENST00000559749 (CTD-2071N1.1-001) 77787193-77788575 antisense
ENST00000560453 (CTD-2071N1.1-002) 77788072-77788674 antisense
ENSG00000259281 (CTD-2632K10.1)
 ENST00000557799 (CTD-2632K10.1-001) 77660052-77668074 antisense
ENSG00000259362 (RP11-307C19.1)
 ENST00000561283 (RP11-307C19.1-001) 77525540-77534110 lincRNA
ENSG00000259420 (RP11-307C19.2)
 ENST00000560590 (RP11-307C19.2-002) 77568970-77573037 lincRNA
ENST00000561123 (RP11-307C19.2-001) 77568970-77608888 lincRNA
ENSG00000259666 (RP11-307C19.3)
 ENST00000558691 (RP11-307C19.3-001) 77641764-77649240 antisense
ENST00000558887 (RP11-307C19.3-002) 77646342-77652288 antisense
ENST00000560265 (RP11-307C19.3-003) 77646358-77648201 antisense
ENSG00000279033 (RP11-500C12.1)
 ENST00000623172 (RP11-500C12.1-001) 77484275-77485606 TEC
ENSG00000280359 (CTD-2071N1.2)
 ENST00000624158 (CTD-2071N1.2-001) 77784610-77785070 TEC
CIL_0003SZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032329-ENSMUSG00000049556 CGP 10090 9:56418644-56685253
GeneTranscriptPositionBiotype
ENSMUSG00000032329 (Hmg20a)
high mobility group 20A 		ENSMUST00000034879 (Hmg20a-201) 56418644-56496884 protein_coding
ENSMUSG00000049556 (Lingo1)
leucine rich repeat and Ig domain containing 1 		ENSMUST00000053568 (Lingo1-001) 56618475-56685253 protein_coding
ENSMUST00000114247 (Lingo1-002) 56619105-56647660 protein_coding
ENSMUST00000114256 (Lingo1-003) 56619088-56635628 protein_coding
ENSMUSG00000097870 (Gm26868)
predicted gene, 26868 		ENSMUST00000181927 (Gm26868-201) 56606693-56614471 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003SZ_0001ENSG00000140382ENST00000336216ENST00000381714ENST00000558176ENST00000558288ENST00000558651ENST00000558845ENST00000559035ENST00000559099ENST00000559728ENST00000560498ENST00000560867ENST00000560986ENSG00000169783ENST00000355300ENST00000557798ENST00000559893ENST00000561030ENST00000561686ENST00000562933ENST00000563316ENST00000564066ENST00000564472ENST00000566711ENST00000567605ENST00000567726ENST00000568951ENST00000570216ENSG00000259213ENST00000559749ENST00000560453ENSG00000259281ENST00000557799ENSG00000259362ENST00000561283ENSG00000259420ENST00000560590ENST00000561123ENSG00000259666ENST00000558691ENST00000558887ENST00000560265ENSG00000279033ENST00000623172ENSG00000280359ENST00000624158CIL_0003SZ_0002ENSMUSG00000032329ENSMUST00000034879ENSMUSG00000049556ENSMUST00000053568ENSMUST00000114247ENSMUST00000114256ENSMUSG00000097870ENSMUST00000181927
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003SZ_0001ENSG00000140382ENST00000336216ENST00000381714ENST00000558288ENST00000559728ENST00000560867ENSG00000169783ENST00000355300ENST00000557798ENST00000561030ENST00000561686ENST00000567726ENSG00000259213ENST00000559749ENST00000560453ENSG00000259281ENST00000557799ENSG00000259362ENST00000561283ENSG00000259420ENST00000560590ENST00000561123ENSG00000259666ENST00000558691ENST00000558887ENSG00000279033ENST00000623172ENSG00000280359ENST00000624158CIL_0003SZ_0002ENSMUSG00000032329ENSMUST00000034879ENSMUSG00000049556ENSMUST00000053568ENSMUST00000114247ENSMUST00000114256ENSMUSG00000097870ENSMUST00000181927
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000140382 ENST00000336216 2.147±0.00 N/A N/A 1.436±0.00 2.177±0.00 0.811±0.25 0.253±0.00 1.854±0.00 0.851±0.00 N/A 0.405±0.23 2.156±1.12 2.556±0.22 3.660±0.00
ENST00000381714 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.215±0.00 N/A 2.773±0.00
ENST00000558176 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558288 N/A N/A N/A 0.725±0.00 0.973±0.01 N/A 0.298±0.00 N/A N/A 0.755±0.00 N/A 0.635±0.00 N/A N/A
ENST00000558651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558845 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559035 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559099 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559728 4.813±0.00 N/A 1.680±0.00 N/A 3.222±0.00 2.410±0.00 1.152±0.00 1.762±0.00 3.208±0.74 2.929±0.00 1.150±0.00 3.301±0.00 N/A N/A
ENST00000560498 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560867 N/A N/A 2.492±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560986 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000169783 ENST00000355300 1.468±0.00 1.892±0.00 0.030±0.00 13.808±11.69 1.800±0.00 1.066±0.00 0.413±0.00 0.766±0.00 0.322±0.00 0.099±0.00 0.220±0.00 0.925±0.66 5.206±2.55 2.087±0.00
ENST00000557798 N/A N/A 0.151±0.00 N/A N/A N/A 0.428±0.00 N/A N/A N/A 0.465±0.00 N/A 3.843±0.49 1.480±0.00
ENST00000559893 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561030 N/A 0.388±0.00 N/A 4.122±0.58 N/A 0.246±0.00 N/A N/A 0.073±0.04 N/A 0.386±0.00 1.037±0.39 3.020±0.00 1.542±0.24
ENST00000561686 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.236±0.00 N/A N/A N/A N/A
ENST00000562933 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563316 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564066 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564472 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566711 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567605 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.731±0.00 N/A N/A N/A
ENST00000568951 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570216 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000259213 ENST00000559749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.839±0.29
ENST00000560453 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.257±0.00
ENSG00000259281 ENST00000557799 N/A N/A N/A 0.111±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.213±0.41
ENSG00000259362 ENST00000561283 N/A 0.063±0.00 N/A 0.020±0.00 N/A 0.004±0.00 0.014±0.01 0.028±0.00 N/A N/A N/A 0.028±0.01 0.022±0.01 0.042±0.01
ENSG00000259420 ENST00000560590 0.091±0.00 0.012±0.00 N/A 0.028±0.00 N/A N/A N/A N/A N/A N/A N/A 0.626±0.37 0.184±0.00 0.097±0.07
ENST00000561123 N/A 0.012±0.00 N/A N/A N/A N/A 0.068±0.00 N/A 0.080±0.00 N/A N/A 0.252±0.14 0.137±0.00 0.082±0.06
ENSG00000259666 ENST00000558691 N/A N/A N/A 0.047±0.01 N/A N/A N/A N/A N/A N/A N/A N/A 0.035±0.00 N/A
ENST00000558887 N/A N/A N/A 0.058±0.02 N/A N/A N/A N/A N/A N/A N/A 0.028±0.00 N/A 0.906±0.00
ENST00000560265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000279033 ENST00000623172 5.267±0.00 10.571±0.00 N/A 7.158±5.50 N/A 2.533±1.54 3.610±2.96 1.152±0.00 4.065±0.00 N/A N/A 2.595±1.35 6.684±2.44 10.664±4.77
ENSG00000280359 ENST00000624158 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.323±0.16
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032329 ENSMUST00000034879 14.840±4.24 17.886±2.88 12.183±1.08 27.384±5.64 12.670±4.62 9.962±1.52 7.512±0.39 11.171±1.35 5.368±1.97 15.250±1.08 3.383±0.67 25.005±6.78 9.677±0.96 3.248±0.90
ENSMUSG00000049556 ENSMUST00000053568 0.417±0.09 0.303±0.12 0.166±0.00 9.114±1.99 0.081±0.00 0.122±0.02 0.192±0.03 0.095±0.04 0.055±0.03 N/A 0.037±0.00 0.090±0.01 0.160±0.11 0.482±0.28
ENSMUST00000114247 0.424±0.19 N/A 0.507±0.00 16.374±11.66 0.805±0.41 0.234±0.11 0.753±0.52 0.153±0.04 0.141±0.13 0.853±0.31 0.195±0.03 0.416±0.21 0.635±0.78 0.297±0.20
ENSMUST00000114256 0.390±0.00 0.523±0.31 0.556±0.05 21.551±11.01 0.143±0.00 0.456±0.00 0.258±0.00 0.082±0.03 0.187±0.10 0.509±0.05 0.169±0.04 0.267±0.10 0.285±0.20 0.245±0.00
ENSMUSG00000097870 ENSMUST00000181927 0.019±0.01 0.020±0.00 0.009±0.00 0.157±0.09 0.044±0.01 0.052±0.02 0.036±0.01 N/A 0.012±0.01 N/A 0.042±0.02 0.049±0.02 0.055±0.03 0.219±0.10

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