C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group 20A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034879 Hmg20a-201 ENSMUSG00000032329 10090 + 9:56418644-56496884 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034879
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034879 14.840±4.24 17.886±2.88 12.183±1.08 27.384±5.64 12.670±4.62 9.962±1.52 7.512±0.39 11.171±1.35 5.368±1.97 15.250±1.08 3.383±0.67 25.005±6.78 9.677±0.96 3.248±0.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001UO CIL_0001UO_0002 CGP 9:56201126-56496884
CIL_0003SZ CIL_0003SZ_0002 CGP 9:56418644-56685253

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0016568 IMP chromatin modification
GO:0045665 IDA negative regulation of neuron differentiation
GO:0046982 IPI protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000336216 HMG20A-001 protein_coding Homo_sapiens 0 2028
ENST00000381714 HMG20A-002 protein_coding Homo_sapiens 0 1805
ENST00000558651 HMG20A-012 protein_coding Homo_sapiens 0 466
ENST00000558845 HMG20A-009 protein_coding Homo_sapiens 0 505
ENST00000559035 HMG20A-014 nonsense_mediated_decay Homo_sapiens 0 342
ENST00000559099 HMG20A-015 protein_coding Homo_sapiens 0 582
ENST00000559728 HMG20A-008 retained_intron Homo_sapiens 0 577
ENST00000560498 HMG20A-007 protein_coding Homo_sapiens 0 326
ENST00000560867 HMG20A-013 protein_coding Homo_sapiens 0 614

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