C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger protein of the cerebellum 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173121 Zic1-003 ENSMUSG00000032368 10090 - 9:91361581-91363054 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastLiverLungPlacentaTestisENSMUST00000173121
Transcript ID Breast Liver Lung Placenta Testis
ENSMUST00000173121 0.358±0.13 0.133±0.02 0.284±0.17 0.223±0.00 0.210±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JF CIL_0007JF_0002 UCNEbase 9:90313955-92046042
CIL_0009BL CIL_0009BL_0002 VISTA 9:90773325-91374668
CIL_0009D8 CIL_0009D8_0002 VISTA 9:90787948-91390091
CIL_0008O7 CIL_0008O7_0002 VISTA 9:91066858-91668202
CIL_00092J CIL_00092J_0002 VISTA 9:91145767-91747284
CIL_00092K CIL_00092K_0002 VISTA 9:91162357-91763891
CIL_000589 CIL_000589_0002 CGP 9:91358058-91389348

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000282928 ZIC1-001 protein_coding Homo_sapiens 0 486
ENST00000376335 ZIC2-001 protein_coding Homo_sapiens 0 274
ENST00000468291 ZIC2-004 processed_transcript Homo_sapiens 0 276
ENST00000477213 ZIC2-005 processed_transcript Homo_sapiens 0 274
ENST00000488404 ZIC1-002 protein_coding Homo_sapiens 0 486
ENST00000490085 ZIC2-002 processed_transcript Homo_sapiens 0 274
ENST00000620342 ZIC2-201 protein_coding Homo_sapiens 0 274

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