C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger protein of the cerebellum 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034927 Zic1-001 ENSMUSG00000032368 10090 - 9:91358058-91365768 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000034927
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034927 0.010±0.00 0.022±0.02 15.481±10.92 0.019±0.00 0.010±0.00 0.014±0.00 0.023±0.03 0.076±0.03 0.094±0.03 0.064±0.05 0.008±0.01 0.026±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JF CIL_0007JF_0002 UCNEbase 9:90313955-92046042
CIL_0009BL CIL_0009BL_0002 VISTA 9:90773325-91374668
CIL_0009D8 CIL_0009D8_0002 VISTA 9:90787948-91390091
CIL_0008O7 CIL_0008O7_0002 VISTA 9:91066858-91668202
CIL_00092J CIL_00092J_0002 VISTA 9:91145767-91747284
CIL_00092K CIL_00092K_0002 VISTA 9:91162357-91763891
CIL_000589 CIL_000589_0002 CGP 9:91358058-91389348

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 NAS skeletal system development
GO:0003677 IEA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007389 IDA pattern specification process
GO:0007417 IGI central nervous system development
GO:0007420 IDA brain development
GO:0007628 IMP adult walking behavior
GO:0008589 IPI regulation of smoothened signaling pathway
GO:0021510 IMP spinal cord development
GO:0030154 IEA cell differentiation
GO:0042307 IDA positive regulation of protein import into nucleus
GO:0042472 ISS inner ear morphogenesis
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000010774 zic2a-001 protein_coding Danio_rerio 0 444
ENSDART00000127597 zic1-001 protein_coding Danio_rerio 6e-22 111
ENST00000282928 ZIC1-001 protein_coding Homo_sapiens 0 2331
ENST00000287538 ZIC3-003 protein_coding Homo_sapiens 0 460
ENST00000370606 ZIC3-001 protein_coding Homo_sapiens 0 449
ENST00000376335 ZIC2-001 protein_coding Homo_sapiens 0 689
ENST00000383075 ZIC4-001 protein_coding Homo_sapiens 0 472
ENST00000425731 ZIC4-201 protein_coding Homo_sapiens 0 472
ENST00000462748 ZIC4-002 protein_coding Homo_sapiens 0 292
ENST00000468291 ZIC2-004 processed_transcript Homo_sapiens 0 274
ENST00000473123 ZIC4-003 protein_coding Homo_sapiens 0 472
ENST00000477213 ZIC2-005 processed_transcript Homo_sapiens 0 283
ENST00000484399 ZIC4-004 protein_coding Homo_sapiens 0 472
ENST00000488404 ZIC1-002 protein_coding Homo_sapiens 0 586
ENST00000490085 ZIC2-002 processed_transcript Homo_sapiens 0 278
ENST00000493664 ZIC4-005 retained_intron Homo_sapiens 0 472
ENST00000525172 ZIC4-202 protein_coding Homo_sapiens 0 472
ENST00000620342 ZIC2-201 protein_coding Homo_sapiens 0 689

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