C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sorting nexin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032382 Snx1 10090 - 9:66088133-66126587 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000034946 Snx1-001 66088133-66124886 protein_coding
  ENSMUST00000132841 Snx1-007 66089124-66091347 retained_intron
  ENSMUST00000137542 Snx1-006 66097406-66126587 protein_coding
  ENSMUST00000139872 Snx1-005 66096559-66101698 retained_intron
  ENSMUST00000143148 Snx1-002 66094187-66096591 retained_intron
  ENSMUST00000145449 Snx1-003 66109142-66124797 retained_intron
  ENSMUST00000146893 Snx1-004 66104475-66105724 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034946ENSMUST00000137542
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034946 28.998±5.00 44.603±1.97 45.901±5.57 25.462±4.92 22.707±1.14 41.242±1.58 7.855±0.73 38.608±1.19 20.214±14.80 32.639±1.86 4.285±1.09 22.852±5.43 48.148±16.62 34.341±13.34
ENSMUST00000137542 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.875±0.00 17.902±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008H0 CIL_0008H0_0002 VISTA 9:65525988-66127110

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005154 IEA epidermal growth factor receptor binding
GO:0005158 IEA insulin receptor binding
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005768 IDA endosome
GO:0005769 IEA early endosome
GO:0005829 IEA cytosol
GO:0006886 IBA intracellular protein transport
GO:0010008 IEA endosome membrane
GO:0016020 IEA membrane
GO:0016023 IBA cytoplasmic membrane-bounded vesicle
GO:0016197 IEA endosomal transport
GO:0030904 IEA retromer complex
GO:0031901 IEA early endosome membrane
GO:0034498 IEA early endosome to Golgi transport
GO:0035091 IBA phosphatidylinositol binding
GO:0042147 IEA retrograde transport, endosome to Golgi
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0043234 IEA protein complex
GO:0045732 IEA positive regulation of protein catabolic process
GO:1990459 IEA transferrin receptor binding
GO:1990460 IEA leptin receptor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071031 snx1a sorting nexin 1a protein_coding Danio_rerio
ENSDARG00000079116 snx1b sorting nexin 1b protein_coding Danio_rerio
ENSG00000028528 SNX1 sorting nexin 1 protein_coding Homo_sapiens

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