C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000137542 Snx1-006 ENSMUSG00000032382 10090 - 9:66097406-66126587 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaTestisENSMUST00000137542
Transcript ID Placenta Testis
ENSMUST00000137542 22.875±0.00 17.902±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008H0 CIL_0008H0_0002 VISTA 9:65525988-66127110

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005768 IDA endosome
GO:0006886 IBA intracellular protein transport
GO:0016023 IBA cytoplasmic membrane-bounded vesicle
GO:0030904 IEA retromer complex
GO:0035091 IBA phosphatidylinositol binding
GO:0042147 IEA retrograde transport, endosome to Golgi

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261889 SNX1-003 protein_coding Homo_sapiens 0 680
ENST00000380285 SNX1-005 nonsense_mediated_decay Homo_sapiens 9e-32 145
ENST00000558040 SNX1-009 protein_coding Homo_sapiens 0 207
ENST00000559061 SNX1-008 protein_coding Homo_sapiens 7e-32 141
ENST00000559389 SNX1-007 nonsense_mediated_decay Homo_sapiens 1e-31 141
ENST00000559844 SNX1-001 protein_coding Homo_sapiens 0 680
ENST00000560260 SNX1-006 nonsense_mediated_decay Homo_sapiens 5e-32 143
ENST00000560829 SNX1-004 protein_coding Homo_sapiens 0 412
ENST00000561026 SNX1-002 protein_coding Homo_sapiens 2e-31 141

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