C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sorting nexin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000028528 SNX1 9606 + 15:64094123-64146090 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261889 SNX1-003 64095993-64139875 protein_coding
  ENST00000380285 SNX1-005 64095991-64144231 nonsense_mediated_decay
  ENST00000558040 SNX1-009 64096026-64146090 protein_coding
  ENST00000559061 SNX1-008 64094276-64126099 protein_coding
  ENST00000559339 SNX1-012 64131829-64132376 processed_transcript
  ENST00000559389 SNX1-007 64096031-64126220 nonsense_mediated_decay
  ENST00000559401 SNX1-013 64131623-64134801 retained_intron
  ENST00000559844 SNX1-001 64096000-64138006 protein_coding
  ENST00000559961 SNX1-014 64134176-64136409 retained_intron
  ENST00000560260 SNX1-006 64096004-64134954 nonsense_mediated_decay
  ENST00000560829 SNX1-004 64094123-64138006 protein_coding
  ENST00000560861 SNX1-010 64136330-64143308 protein_coding
  ENST00000561026 SNX1-002 64096014-64137618 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000380285ENST00000559844ENST00000560829ENST00000561026
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000380285 N/A 5.295±0.00 N/A N/A 2.448±0.00 2.003±0.00 3.992±0.00 1.417±0.00 2.066±0.00 0.419±0.00 2.709±0.05 2.971±0.17 3.023±0.00
ENST00000559844 13.863±0.00 17.188±0.00 2.941±0.00 7.302±4.62 6.350±3.30 14.321±0.00 12.215±8.23 16.349±0.00 9.573±6.88 4.828±3.44 15.440±7.84 33.546±9.60 11.376±0.16
ENST00000560829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.502±0.00
ENST00000561026 N/A N/A N/A N/A N/A N/A 12.019±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000509 CIL_000509_0002 CGP 15:64094123-64157481

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005154 IDA epidermal growth factor receptor binding
GO:0005158 IDA insulin receptor binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005768 IEA endosome
GO:0005769 IEA early endosome
GO:0005794 IEA Golgi apparatus
GO:0005829 IEA cytosol
GO:0006886 IEA:IMP intracellular protein transport
GO:0010008 IDA endosome membrane
GO:0016020 IDA membrane
GO:0016023 IBA cytoplasmic membrane-bounded vesicle
GO:0016197 IEA endosomal transport
GO:0030904 IEA retromer complex
GO:0031901 IDA early endosome membrane
GO:0034498 IMP early endosome to Golgi transport
GO:0035091 IEA:IDA phosphatidylinositol binding
GO:0042147 IEA retrograde transport, endosome to Golgi
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043234 IDA protein complex
GO:0045732 IEA positive regulation of protein catabolic process
GO:1990459 IDA transferrin receptor binding
GO:1990460 IDA leptin receptor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071031 snx1a sorting nexin 1a protein_coding Danio_rerio
ENSDARG00000079116 snx1b sorting nexin 1b protein_coding Danio_rerio
ENSMUSG00000032382 Snx1 sorting nexin 1 protein_coding Mus_musculus

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