C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034946 Snx1-001 ENSMUSG00000032382 10090 - 9:66088133-66124886 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034946
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034946 28.998±5.00 44.603±1.97 45.901±5.57 25.462±4.92 22.707±1.14 41.242±1.58 7.855±0.73 38.608±1.19 20.214±14.80 32.639±1.86 4.285±1.09 22.852±5.43 48.148±16.62 34.341±13.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008H0 CIL_0008H0_0002 VISTA 9:65525988-66127110

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005154 IEA epidermal growth factor receptor binding
GO:0005158 IEA insulin receptor binding
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005768 IDA endosome
GO:0005769 IEA early endosome
GO:0005829 IEA cytosol
GO:0006886 IBA intracellular protein transport
GO:0010008 IEA endosome membrane
GO:0016020 IEA membrane
GO:0016023 IBA cytoplasmic membrane-bounded vesicle
GO:0016197 IEA endosomal transport
GO:0030904 IEA retromer complex
GO:0031901 IEA early endosome membrane
GO:0034498 IEA early endosome to Golgi transport
GO:0035091 IBA phosphatidylinositol binding
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0043234 IEA protein complex
GO:0045732 IEA positive regulation of protein catabolic process
GO:1990459 IEA transferrin receptor binding
GO:1990460 IEA leptin receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261889 SNX1-003 protein_coding Homo_sapiens 0 1967
ENST00000380285 SNX1-005 nonsense_mediated_decay Homo_sapiens 0 2124
ENST00000558040 SNX1-009 protein_coding Homo_sapiens 0 396
ENST00000559061 SNX1-008 protein_coding Homo_sapiens 7e-32 141
ENST00000559389 SNX1-007 nonsense_mediated_decay Homo_sapiens 0 320
ENST00000559401 SNX1-013 retained_intron Homo_sapiens 0 501
ENST00000559844 SNX1-001 protein_coding Homo_sapiens 0 2553
ENST00000559961 SNX1-014 retained_intron Homo_sapiens 0 298
ENST00000560260 SNX1-006 nonsense_mediated_decay Homo_sapiens 0 785
ENST00000560829 SNX1-004 protein_coding Homo_sapiens 0 1751
ENST00000561026 SNX1-002 protein_coding Homo_sapiens 0 1476

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