C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: U2 snRNP-associated SURP domain containing
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032407 U2surp 10090 - 9:95456898-95511996 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000078374 U2surp-001 95460978-95511996 protein_coding
  ENSMUST00000079659 U2surp-002 95456898-95511894 protein_coding
  ENSMUST00000185515 U2surp-005 95493108-95511859 protein_coding
  ENSMUST00000186076 U2surp-004 95502004-95511885 retained_intron
  ENSMUST00000186139 U2surp-007 95478028-95482244 retained_intron
  ENSMUST00000188017 U2surp-008 95509034-95511879 retained_intron
  ENSMUST00000190019 U2surp-006 95493726-95511856 protein_coding
  ENSMUST00000191213 U2surp-009 95461354-95511995 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000078374ENSMUST00000079659ENSMUST00000186139ENSMUST00000188017ENSMUST00000191213
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000078374 0.858±0.09 0.438±0.00 3.791±0.11 5.400±1.74 0.933±0.38 0.752±0.22 1.587±0.40 0.992±0.30 6.807±2.18 0.951±0.00 0.858±0.25 8.398±4.19 12.129±7.82 1.784±1.62
ENSMUST00000079659 1.924±0.89 0.693±0.30 4.528±0.71 7.239±2.93 1.321±0.35 0.971±0.38 1.351±0.13 2.187±0.53 2.825±1.44 2.348±0.76 2.001±0.32 1.760±1.40 2.534±1.16 0.919±0.14
ENSMUST00000186139 N/A 0.487±0.00 N/A N/A 0.369±0.00 0.710±0.00 N/A N/A N/A N/A N/A 1.059±0.34 N/A N/A
ENSMUST00000188017 N/A 0.258±0.07 N/A N/A N/A 0.261±0.00 N/A N/A N/A N/A N/A 0.485±0.12 N/A N/A
ENSMUST00000191213 1.002±0.25 0.341±0.10 N/A 11.152±0.00 0.526±0.06 0.493±0.12 N/A 1.250±0.00 1.776±0.97 0.631±0.00 1.144±0.36 4.872±7.13 10.265±8.11 4.076±5.94

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006396 IEA RNA processing
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061490 u2surp U2 snRNP-associated SURP domain containing protein_coding Danio_rerio
ENSG00000163714 U2SURP U2 snRNP-associated SURP domain containing protein_coding Homo_sapiens

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