C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: U2 snRNP-associated SURP domain containing
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079659 U2surp-002 ENSMUSG00000032407 10090 - 9:95456898-95511894 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000079659
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079659 1.924±0.89 0.693±0.30 4.528±0.71 7.239±2.93 1.321±0.35 0.971±0.38 1.351±0.13 2.187±0.53 2.825±1.44 2.348±0.76 2.001±0.32 1.760±1.40 2.534±1.16 0.919±0.14

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006396 IEA RNA processing
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000132651 u2surp-001 protein_coding Danio_rerio 0 854
ENSDART00000087714 u2surp-201 protein_coding Danio_rerio 0 760
ENST00000461591 U2SURP-003 retained_intron Homo_sapiens 0 1836
ENST00000461844 U2SURP-018 retained_intron Homo_sapiens 0 329
ENST00000463563 U2SURP-004 nonsense_mediated_decay Homo_sapiens 0 3145
ENST00000465175 U2SURP-007 protein_coding Homo_sapiens 0 640
ENST00000467348 U2SURP-019 protein_coding Homo_sapiens 0 929
ENST00000470400 U2SURP-009 retained_intron Homo_sapiens 0 1230
ENST00000472373 U2SURP-014 retained_intron Homo_sapiens 0 926
ENST00000473835 U2SURP-001 protein_coding Homo_sapiens 0 5070
ENST00000480029 U2SURP-005 protein_coding Homo_sapiens 0 2126
ENST00000485374 U2SURP-010 nonsense_mediated_decay Homo_sapiens 0 429
ENST00000488497 U2SURP-002 nonsense_mediated_decay Homo_sapiens 0 2582
ENST00000488587 U2SURP-012 retained_intron Homo_sapiens 0 1092
ENST00000491827 U2SURP-011 retained_intron Homo_sapiens 0 634
ENST00000493598 U2SURP-022 protein_coding Homo_sapiens 0 4809
ENST00000493782 U2SURP-006 protein_coding Homo_sapiens 0 754
ENST00000495088 RP11-624D20.1-001 processed_pseudogene Homo_sapiens 0 861
ENST00000496100 U2SURP-017 retained_intron Homo_sapiens 0 292
ENST00000600150 U2SURP-008 protein_coding Homo_sapiens 0 490

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