C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: U2 snRNP-associated SURP domain containing
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000078374 U2surp-001 ENSMUSG00000032407 10090 - 9:95460978-95511996 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000078374
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000078374 0.858±0.09 0.438±0.00 3.791±0.11 5.400±1.74 0.933±0.38 0.752±0.22 1.587±0.40 0.992±0.30 6.807±2.18 0.951±0.00 0.858±0.25 8.398±4.19 12.129±7.82 1.784±1.62

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0006396 IEA RNA processing
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000132651 u2surp-001 protein_coding Danio_rerio 0 854
ENSDART00000087714 u2surp-201 protein_coding Danio_rerio 0 760
ENST00000461591 U2SURP-003 retained_intron Homo_sapiens 0 1458
ENST00000461844 U2SURP-018 retained_intron Homo_sapiens 0 329
ENST00000463563 U2SURP-004 nonsense_mediated_decay Homo_sapiens 0 2937
ENST00000465175 U2SURP-007 protein_coding Homo_sapiens 0 359
ENST00000467348 U2SURP-019 protein_coding Homo_sapiens 0 929
ENST00000470400 U2SURP-009 retained_intron Homo_sapiens 0 878
ENST00000472373 U2SURP-014 retained_intron Homo_sapiens 0 926
ENST00000473835 U2SURP-001 protein_coding Homo_sapiens 0 4468
ENST00000480029 U2SURP-005 protein_coding Homo_sapiens 0 2126
ENST00000485374 U2SURP-010 nonsense_mediated_decay Homo_sapiens 0 315
ENST00000488497 U2SURP-002 nonsense_mediated_decay Homo_sapiens 0 2582
ENST00000488587 U2SURP-012 retained_intron Homo_sapiens 0 1092
ENST00000491827 U2SURP-011 retained_intron Homo_sapiens 0 486
ENST00000493598 U2SURP-022 protein_coding Homo_sapiens 0 4438
ENST00000493782 U2SURP-006 protein_coding Homo_sapiens 0 361
ENST00000495088 RP11-624D20.1-001 processed_pseudogene Homo_sapiens 0 861
ENST00000496100 U2SURP-017 retained_intron Homo_sapiens 0 292
ENST00000600150 U2SURP-008 protein_coding Homo_sapiens 0 285

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