C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: 5'-3' exoribonuclease 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000185633 Xrn1-001 ENSMUSG00000032410 10090 + 9:95954767-96057803 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000185633
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000185633 1.790±0.43 0.961±0.00 2.794±1.37 2.559±0.47 1.961±1.10 1.343±0.14 0.750±0.23 1.119±0.34 1.524±0.87 2.552±0.33 1.012±0.28 2.261±1.11 2.779±0.87 2.360±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001B7 CIL_0001B7_0002 CGP 9:95954760-96184608

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264951 XRN1-001 protein_coding Homo_sapiens 0 5204
ENST00000392981 XRN1-004 protein_coding Homo_sapiens 0 5142
ENST00000463916 XRN1-003 protein_coding Homo_sapiens 0 1977
ENST00000465507 XRN1-010 retained_intron Homo_sapiens 0 346
ENST00000467077 XRN1-014 retained_intron Homo_sapiens 0 579
ENST00000468894 XRN1-013 processed_transcript Homo_sapiens 9e-24 113
ENST00000470537 XRN1-007 retained_intron Homo_sapiens 0 678
ENST00000472625 XRN1-011 retained_intron Homo_sapiens 0 473
ENST00000472697 XRN1-005 retained_intron Homo_sapiens 0 3304
ENST00000477237 XRN1-009 protein_coding Homo_sapiens 0 941
ENST00000486211 XRN1-002 nonsense_mediated_decay Homo_sapiens 0 959
ENST00000489241 XRN1-012 nonsense_mediated_decay Homo_sapiens 0 187
ENST00000498077 XRN1-006 protein_coding Homo_sapiens 0 2861

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