C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000183032 Rbm6-002 ENSMUSG00000032582 10090 - 9:107773563-107872821 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000183032
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000183032 2.933±0.60 1.178±0.36 8.724±1.98 17.267±1.67 3.314±1.90 1.886±0.87 1.936±0.18 2.048±0.42 4.243±3.09 4.760±1.28 2.997±0.46 6.293±8.27 13.938±6.96 7.240±4.28

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0005634 IDA nucleus
GO:0044822 IEA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000266022 RBM6-001 protein_coding Homo_sapiens 0 4545
ENST00000419610 RBM6-002 nonsense_mediated_decay Homo_sapiens 0 2139
ENST00000421682 RBM6-019 protein_coding Homo_sapiens 0 435
ENST00000422955 RBM6-007 protein_coding Homo_sapiens 0 2235
ENST00000425608 RBM6-005 nonsense_mediated_decay Homo_sapiens 0 2098
ENST00000433811 RBM6-010 protein_coding Homo_sapiens 0 427
ENST00000434592 RBM6-008 nonsense_mediated_decay Homo_sapiens 0 1735
ENST00000438912 RBM6-017 protein_coding Homo_sapiens 0 549
ENST00000441115 RBM6-004 processed_transcript Homo_sapiens 0 1668
ENST00000442092 RBM6-006 protein_coding Homo_sapiens 0 2231
ENST00000443081 RBM6-009 protein_coding Homo_sapiens 0 4314
ENST00000446471 RBM6-014 protein_coding Homo_sapiens 0 464
ENST00000454079 RBM6-003 nonsense_mediated_decay Homo_sapiens 0 3114
ENST00000464013 RBM6-023 processed_transcript Homo_sapiens 0 320
ENST00000478026 RBM6-020 retained_intron Homo_sapiens 0 281
ENST00000483350 RBM6-016 retained_intron Homo_sapiens 0 652

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