C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: four and a half LIM domains 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106199 Fhl3-002 ENSMUSG00000032643 10090 + 4:124700701-124708094 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000106199
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000106199 3.345±1.15 6.554±0.59 0.580±0.12 0.614±0.17 13.196±8.32 2.126±0.64 2.447±0.77 1.657±0.52 0.544±0.38 4.989±1.35 6.779±1.32 1.877±0.26 0.389±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008II CIL_0008II_0002 VISTA 4:124101702-124703017
CIL_0007QK CIL_0007QK_0002 VISTA 4:124155077-124756356
CIL_0008ZP CIL_0008ZP_0002 VISTA 4:124158302-124761497
CIL_0007QI CIL_0007QI_0002 VISTA 4:124177456-124779254
CIL_000892 CIL_000892_0002 VISTA 4:124220131-124821365
CIL_0008EP CIL_0008EP_0002 VISTA 4:124226300-124827138
CIL_0008NZ CIL_0008NZ_0002 VISTA 4:124251046-124852185
CIL_0007UI CIL_0007UI_0002 VISTA 4:124315408-124916812
CIL_00095Y CIL_00095Y_0002 VISTA 4:124371949-124972943
CIL_0001ZV CIL_0001ZV_0002 CGP 4:124678160-124708611

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0003779 IDA actin binding
GO:0005634 IDA nucleus
GO:0008270 IEA zinc ion binding
GO:0030018 IDA Z disc
GO:0030036 IDA actin cytoskeleton organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373016 FHL3-001 protein_coding Homo_sapiens 0 1166
ENST00000475084 FHL3-005 processed_transcript Homo_sapiens 0 457
ENST00000477194 FHL3-004 processed_transcript Homo_sapiens 0 1081
ENST00000483132 FHL3-003 processed_transcript Homo_sapiens 0 414
ENST00000485803 FHL3-002 processed_transcript Homo_sapiens 0 883

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