C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: four and a half LIM domains 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038684 Fhl3-001 ENSMUSG00000032643 10090 + 4:124700720-124708611 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038684
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038684 2.510±0.72 1.158±0.27 1.309±0.19 0.677±0.50 6.589±5.78 1.924±0.73 2.303±1.69 1.741±0.58 1.137±0.86 2.687±1.96 78.524±17.49 2.774±1.06 6.061±4.65 0.191±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008II CIL_0008II_0002 VISTA 4:124101702-124703017
CIL_0007QK CIL_0007QK_0002 VISTA 4:124155077-124756356
CIL_0008ZP CIL_0008ZP_0002 VISTA 4:124158302-124761497
CIL_0007QI CIL_0007QI_0002 VISTA 4:124177456-124779254
CIL_000892 CIL_000892_0002 VISTA 4:124220131-124821365
CIL_0008EP CIL_0008EP_0002 VISTA 4:124226300-124827138
CIL_0008NZ CIL_0008NZ_0002 VISTA 4:124251046-124852185
CIL_0007UI CIL_0007UI_0002 VISTA 4:124315408-124916812
CIL_00095Y CIL_00095Y_0002 VISTA 4:124371949-124972943
CIL_0001ZV CIL_0001ZV_0002 CGP 4:124678160-124708611

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0003779 IDA actin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005925 IEA focal adhesion
GO:0008270 IEA zinc ion binding
GO:0030018 IDA Z disc
GO:0030036 IDA actin cytoskeleton organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373016 FHL3-001 protein_coding Homo_sapiens 0 1033
ENST00000475084 FHL3-005 processed_transcript Homo_sapiens 0 315
ENST00000477194 FHL3-004 processed_transcript Homo_sapiens 0 950
ENST00000483132 FHL3-003 processed_transcript Homo_sapiens 0 414
ENST00000485803 FHL3-002 processed_transcript Homo_sapiens 0 752

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