C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: actin binding LIM protein family, member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032735 Ablim3 10090 - 18:61799395-61911852 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000049378 Ablim3-201 61799395-61911824 protein_coding
  ENSMUST00000166783 Ablim3-202 61799395-61911852 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonLiverMuscleOvaryPlacentaTestisENSMUST00000049378ENSMUST00000166783
Transcript ID Adrenal Brain Breast Colon Liver Muscle Ovary Placenta Testis
ENSMUST00000049378 2.270±0.09 4.187±3.37 N/A 0.323±0.07 N/A 0.795±0.00 0.460±0.15 0.053±0.00 N/A
ENSMUST00000166783 N/A 7.376±4.54 1.623±0.00 0.218±0.07 0.223±0.24 N/A N/A 0.036±0.01 0.133±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000851 CIL_000851_0002 VISTA 18:61337492-61938739
CIL_0007ZC CIL_0007ZC_0002 VISTA 18:61351102-61954077
CIL_0001F8 CIL_0001F8_0002 CGP 18:61730261-61911852
CIL_0001F7 CIL_0001F7_0002 CGP 18:61799395-62015715

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001725 ISO stress fiber
GO:0003674 ND molecular_function
GO:0003779 IEA actin binding
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0030027 ISO lamellipodium
GO:0030032 ISO lamellipodium assembly
GO:0030036 IEA actin cytoskeleton organization
GO:0042384 ISO cilium assembly
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029772 ablim3 actin binding LIM protein family, member 3 protein_coding Danio_rerio
ENSDARG00000087298 ABLIM3 (2 of 3) actin binding LIM protein family, member 3 protein_coding Danio_rerio
ENSDARG00000088168 ablim3 actin binding LIM protein family, member 3 protein_coding Danio_rerio
ENSG00000173210 ABLIM3 actin binding LIM protein family, member 3 protein_coding Homo_sapiens

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