C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: actin binding LIM protein family, member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000173210 ABLIM3 9606 + 5:149141483-149260542 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000309868 ABLIM3-001 149141503-149260439 protein_coding
  ENST00000326685 ABLIM3-006 149141483-149260542 protein_coding
  ENST00000356541 ABLIM3-201 149243348-149258457 protein_coding
  ENST00000502855 ABLIM3-010 149252344-149258574 retained_intron
  ENST00000504238 ABLIM3-004 149141821-149260439 protein_coding
  ENST00000506113 ABLIM3-002 149141614-149260439 protein_coding
  ENST00000508983 ABLIM3-005 149142047-149258413 protein_coding
  ENST00000514212 ABLIM3-009 149233253-149242584 retained_intron
  ENST00000515171 ABLIM3-003 149141751-149260439 nonsense_mediated_decay
  ENST00000515796 ABLIM3-008 149183549-149200620 retained_intron
  ENST00000517451 ABLIM3-011 149243348-149258457 protein_coding
  ENST00000519549 ABLIM3-012 149237448-149240617 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000309868ENST00000326685ENST00000504238ENST00000506113ENST00000508983ENST00000515171
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000309868 N/A N/A N/A 1.703±0.20 N/A N/A N/A N/A N/A N/A 11.177±0.00 N/A N/A N/A
ENST00000326685 35.101±0.00 6.624±0.00 N/A 0.727±0.00 12.989±0.00 11.630±0.00 6.168±3.61 9.195±0.00 14.292±13.67 4.467±2.44 1.882±1.26 1.250±0.57 15.610±6.76 2.271±1.31
ENST00000504238 33.938±0.00 6.127±0.00 N/A 4.540±0.00 8.417±7.59 5.720±5.17 1.524±0.00 8.888±0.00 N/A 3.915±0.00 N/A 1.154±0.27 N/A 3.320±0.00
ENST00000506113 N/A N/A N/A N/A N/A N/A 4.806±3.21 1.102±0.00 N/A N/A N/A N/A N/A N/A
ENST00000508983 N/A N/A 1.233±0.00 N/A N/A 0.293±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515171 20.582±0.00 N/A N/A N/A N/A 3.721±3.60 1.031±0.00 N/A 12.477±0.00 N/A N/A 2.110±0.00 7.047±2.58 0.379±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001GC CIL_0001GC_0002 CGP 5:148923639-149260542
CIL_0007ZC CIL_0007ZC_0001 VISTA 5:149122130-149725513
CIL_0001GD CIL_0001GD_0003 CGP 5:149141483-149341802

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0003779 IEA actin binding
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007010 IEA cytoskeleton organization
GO:0007411 TAS axon guidance
GO:0008270 IEA zinc ion binding
GO:0030027 IDA lamellipodium
GO:0030032 IMP lamellipodium assembly
GO:0030036 IEA actin cytoskeleton organization
GO:0042384 IMP cilium assembly
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029772 ablim3 actin binding LIM protein family, member 3 protein_coding Danio_rerio
ENSDARG00000087298 ABLIM3 (2 of 3) actin binding LIM protein family, member 3 protein_coding Danio_rerio
ENSDARG00000088168 ablim3 actin binding LIM protein family, member 3 protein_coding Danio_rerio
ENSMUSG00000032735 Ablim3 actin binding LIM protein family, member 3 protein_coding Mus_musculus

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