C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin binding LIM protein family, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049378 Ablim3-201 ENSMUSG00000032735 10090 - 18:61799395-61911824 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonMuscleOvaryPlacentaENSMUST00000049378
Transcript ID Adrenal Brain Colon Muscle Ovary Placenta
ENSMUST00000049378 2.270±0.09 4.187±3.37 0.323±0.07 0.795±0.00 0.460±0.15 0.053±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000851 CIL_000851_0002 VISTA 18:61337492-61938739
CIL_0007ZC CIL_0007ZC_0002 VISTA 18:61351102-61954077
CIL_0001F8 CIL_0001F8_0002 CGP 18:61730261-61911852
CIL_0001F7 CIL_0001F7_0002 CGP 18:61799395-62015715

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 ISO stress fiber
GO:0003674 ND molecular_function
GO:0003779 IEA actin binding
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0030027 ISO lamellipodium
GO:0030032 ISO lamellipodium assembly
GO:0030036 IEA actin cytoskeleton organization
GO:0042384 ISO cilium assembly
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000309868 ABLIM3-001 protein_coding Homo_sapiens 0 3378
ENST00000326685 ABLIM3-006 protein_coding Homo_sapiens 0 1513
ENST00000356541 ABLIM3-201 protein_coding Homo_sapiens 0 1053
ENST00000502855 ABLIM3-010 retained_intron Homo_sapiens 0 448
ENST00000504238 ABLIM3-004 protein_coding Homo_sapiens 0 1391
ENST00000506113 ABLIM3-002 protein_coding Homo_sapiens 0 3709
ENST00000508983 ABLIM3-005 protein_coding Homo_sapiens 0 1670
ENST00000514212 ABLIM3-009 retained_intron Homo_sapiens 0 745
ENST00000515171 ABLIM3-003 nonsense_mediated_decay Homo_sapiens 0 1437
ENST00000515796 ABLIM3-008 retained_intron Homo_sapiens 0 462
ENST00000517451 ABLIM3-011 protein_coding Homo_sapiens 0 1074
ENST00000519549 ABLIM3-012 processed_transcript Homo_sapiens 0 444

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