C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA D430042O09 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032743 D430042O09Rik 10090 + 7:125707915-125874793 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000069660 D430042O09Rik-001 125707915-125874793 protein_coding
  ENSMUST00000122337 D430042O09Rik-002 125786255-125861996 protein_coding
  ENSMUST00000124223 D430042O09Rik-003 125829667-125874793 protein_coding
  ENSMUST00000132204 D430042O09Rik-007 125860682-125872252 protein_coding
  ENSMUST00000142464 D430042O09Rik-004 125707915-125761832 protein_coding
  ENSMUST00000148701 D430042O09Rik-005 125707991-125761769 protein_coding
  ENSMUST00000155059 D430042O09Rik-006 125865271-125868064 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000069660ENSMUST00000122337ENSMUST00000124223
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000069660 2.882±1.59 1.221±0.00 2.201±0.31 2.922±1.88 2.471±0.82 3.392±1.17 1.085±0.60 2.633±1.17 1.323±0.53 2.518±1.32 1.030±0.30 6.019±1.67 3.084±1.48 9.959±2.98
ENSMUST00000122337 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.241±0.00 N/A N/A N/A
ENSMUST00000124223 1.776±0.82 3.582±1.95 2.146±0.00 2.064±0.63 2.704±0.60 3.206±0.47 1.421±0.34 2.456±0.66 1.444±0.87 2.995±0.73 0.413±0.14 4.683±1.68 1.200±0.02 8.135±0.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008FH CIL_0008FH_0002 VISTA 7:125464047-126065353
CIL_000435 CIL_000435_0002 CGP 7:125640955-125874793
CIL_0005TR CIL_0005TR_0002 CGP 7:125707915-126082411

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005615 IEA extracellular space
GO:0005634 IEA nucleus
GO:0005886 IEA plasma membrane
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000092347 si:dkey-161j23.6 si:dkey-161j23.6 protein_coding Danio_rerio
ENSDARG00000092882 si:dkey-161j23.7 si:dkey-161j23.7 protein_coding Danio_rerio
ENSDARG00000094441 si:dkey-161j23.5 si:dkey-161j23.5 protein_coding Danio_rerio
ENSG00000047578 KIAA0556 KIAA0556 protein_coding Homo_sapiens

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