C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GC-rich promoter binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032745 Gpbp1 10090 - 13:111425680-111490111 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000047627 Gpbp1-002 111425680-111490111 protein_coding
  ENSMUST00000091236 Gpbp1-001 111425932-111490028 protein_coding
  ENSMUST00000129638 Gpbp1-004 111440742-111453423 retained_intron
  ENSMUST00000136471 Gpbp1-003 111426158-111487712 nonsense_mediated_decay
  ENSMUST00000143331 Gpbp1-006 111440672-111453382 processed_transcript
  ENSMUST00000156221 Gpbp1-005 111438071-111453423 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047627ENSMUST00000091236ENSMUST00000129638ENSMUST00000136471ENSMUST00000156221
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047627 1.780±0.50 0.564±0.05 6.288±0.17 9.780±2.16 1.538±0.49 0.670±0.20 0.896±0.09 1.482±0.32 3.913±3.09 1.678±0.45 7.608±1.30 4.373±4.94 15.319±4.33 14.166±5.47
ENSMUST00000091236 1.318±0.36 0.402±0.01 4.751±1.49 5.408±1.24 0.679±0.24 0.803±0.32 1.652±0.66 0.848±0.37 3.182±2.28 1.546±0.44 3.501±0.94 5.118±3.54 13.871±2.67 9.376±3.62
ENSMUST00000129638 N/A N/A N/A 29.592±0.00 N/A N/A N/A N/A N/A N/A N/A 26.237±24.74 86.894±9.62 67.162±0.00
ENSMUST00000136471 0.840±0.00 0.412±0.02 6.844±0.00 8.598±6.37 0.903±0.22 0.787±0.25 0.997±0.12 0.973±0.33 2.930±2.34 1.192±0.30 3.584±0.68 5.913±9.15 28.310±18.71 37.049±0.00
ENSMUST00000156221 N/A N/A N/A N/A N/A 1.015±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089Y CIL_00089Y_0002 VISTA 13:111045678-111646779

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0045893 IDA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000062194 GPBP1 GC-rich promoter binding protein 1 protein_coding Homo_sapiens

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