C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GC-rich promoter binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047627 Gpbp1-002 ENSMUSG00000032745 10090 - 13:111425680-111490111 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047627
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047627 1.780±0.50 0.564±0.05 6.288±0.17 9.780±2.16 1.538±0.49 0.670±0.20 0.896±0.09 1.482±0.32 3.913±3.09 1.678±0.45 7.608±1.30 4.373±4.94 15.319±4.33 14.166±5.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089Y CIL_00089Y_0002 VISTA 13:111045678-111646779

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0045893 IDA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264779 GPBP1-002 protein_coding Homo_sapiens 0 1886
ENST00000309096 GPBP1-008 retained_intron Homo_sapiens 0 782
ENST00000424459 GPBP1-001 protein_coding Homo_sapiens 0 4401
ENST00000506184 GPBP1-003 protein_coding Homo_sapiens 0 1905
ENST00000510606 RP11-781M16.1-001 processed_pseudogene Homo_sapiens 0 448
ENST00000511209 GPBP1-006 protein_coding Homo_sapiens 0 1369
ENST00000513524 GPBP1-004 retained_intron Homo_sapiens 0 669
ENST00000513732 GPBP1-007 retained_intron Homo_sapiens 0 231
ENST00000514387 GPBP1-005 protein_coding Homo_sapiens 0 2218
ENST00000515484 GPBP1-009 retained_intron Homo_sapiens 0 582

Loading