C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GC-rich promoter binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000062194 GPBP1 9606 + 5:57173948-57264679 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264779 GPBP1-002 57214121-57263085 protein_coding
  ENST00000309096 GPBP1-008 57245468-57251012 retained_intron
  ENST00000424459 GPBP1-001 57173948-57264679 protein_coding
  ENST00000506184 GPBP1-003 57174117-57263082 protein_coding
  ENST00000511209 GPBP1-006 57175946-57263085 protein_coding
  ENST00000513524 GPBP1-004 57237041-57249479 retained_intron
  ENST00000513732 GPBP1-007 57231303-57237489 retained_intron
  ENST00000514387 GPBP1-005 57174049-57263587 protein_coding
  ENST00000515484 GPBP1-009 57248862-57261238 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264779ENST00000424459ENST00000506184ENST00000511209ENST00000514387
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264779 10.939±0.00 15.931±0.00 N/A 17.378±0.00 10.335±0.00 18.090±0.00 4.491±0.00 8.199±4.95 5.423±0.00 12.375±8.81 5.952±0.00 14.234±4.24 9.796±5.88 38.724±12.87
ENST00000424459 N/A N/A N/A 2.513±0.12 1.525±0.16 1.779±0.00 0.891±0.00 0.615±0.00 N/A 1.862±0.29 0.650±0.00 4.165±1.34 1.237±0.17 5.362±0.00
ENST00000506184 7.559±0.00 5.677±0.00 2.480±0.00 5.930±0.00 3.358±0.15 6.167±0.46 4.505±2.30 7.344±0.00 3.888±1.84 8.938±0.00 5.260±1.27 5.249±1.22 6.209±2.54 22.547±12.95
ENST00000511209 N/A N/A N/A 3.602±0.00 N/A N/A N/A N/A N/A 3.240±0.00 N/A N/A N/A N/A
ENST00000514387 3.347±0.00 4.370±0.00 2.243±0.00 4.923±2.03 4.296±0.00 3.056±0.00 3.174±0.00 3.174±2.37 1.318±0.00 5.395±0.00 2.510±0.00 5.174±2.03 2.548±0.89 10.245±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089Y CIL_00089Y_0001 VISTA 5:57082966-57684027

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0045893 IEA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000032745 Gpbp1 GC-rich promoter binding protein 1 protein_coding Mus_musculus

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