C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00089Y_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2057 VISTA 9606 5:57082966-57684027
GeneTranscriptPositionBiotype
ENSG00000062194 (GPBP1)
GC-rich promoter binding protein 1 		ENST00000264779 (GPBP1-002) 57214121-57263085 protein_coding
ENST00000309096 (GPBP1-008) 57245468-57251012 retained_intron
ENST00000424459 (GPBP1-001) 57173948-57264679 protein_coding
ENST00000506184 (GPBP1-003) 57174117-57263082 protein_coding
ENST00000511209 (GPBP1-006) 57175946-57263085 protein_coding
ENST00000513524 (GPBP1-004) 57237041-57249479 retained_intron
ENST00000513732 (GPBP1-007) 57231303-57237489 retained_intron
ENST00000514387 (GPBP1-005) 57174049-57263587 protein_coding
ENST00000515484 (GPBP1-009) 57248862-57261238 retained_intron
ENSG00000169067 (ACTBL2)
actin, beta-like 2 		ENST00000423391 (ACTBL2-001) 57480016-57482809 protein_coding
ENSG00000207293 (Y_RNA)
Y RNA 		ENST00000384563 (Y_RNA.1-725) 57169108-57169209 misc_RNA
ENSG00000248294 (CTD-2023N9.2)
 ENST00000513392 (CTD-2023N9.2-001) 57574027-57614341 lincRNA
ENSG00000248586 (CTD-2516K3.3)
 ENST00000510053 (CTD-2516K3.3-001) 57317989-57320020 processed_pseudogene
ENSG00000249436 (LINCR-0003)
uncharacterized LincR-0003 		ENST00000509844 (LINCR-0003-001) 57614389-57617431 lincRNA
ENSG00000250308 (SALL4P1)
spalt-like transcription factor 4 pseudogene 1 		ENST00000510352 (SALL4P1-001) 57422464-57424391 processed_pseudogene
ENSG00000250961 (CTD-2023N9.1)
 ENST00000506106 (CTD-2023N9.1-001) 57395060-57533424 antisense
CIL_00089Y_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2057 VISTA 10090 13:111045678-111646779
GeneTranscriptPositionBiotype
ENSMUSG00000032745 (Gpbp1)
GC-rich promoter binding protein 1 		ENSMUST00000047627 (Gpbp1-002) 111425680-111490111 protein_coding
ENSMUST00000091236 (Gpbp1-001) 111425932-111490028 protein_coding
ENSMUST00000129638 (Gpbp1-004) 111440742-111453423 retained_intron
ENSMUST00000136471 (Gpbp1-003) 111426158-111487712 nonsense_mediated_decay
ENSMUST00000143331 (Gpbp1-006) 111440672-111453382 processed_transcript
ENSMUST00000156221 (Gpbp1-005) 111438071-111453423 processed_transcript
ENSMUSG00000055194 (Actbl2)
actin, beta-like 2 		ENSMUST00000054716 (Actbl2-201) 111255013-111257749 protein_coding
ENSMUSG00000081277 (Gm15285)
predicted gene 15285 		ENSMUST00000119271 (Gm15285-001) 111361203-111361675 processed_pseudogene
ENSMUSG00000082258 (Gm15289)
predicted gene 15289 		ENSMUST00000117793 (Gm15289-001) 111361676-111361919 processed_pseudogene
ENSMUSG00000085634 (Gm15290)
predicted gene 15290 		ENSMUST00000132880 (Gm15290-001) 111522436-111549911 lincRNA
ENSMUSG00000086201 (Gm6270)
predicted gene 6270 		ENSMUST00000132731 (Gm6270-001) 111361840-111368680 lincRNA
ENSMUSG00000086649 (Gm15286)
predicted gene 15286 		ENSMUST00000150623 (Gm15286-002) 111616541-111642835 processed_transcript
ENSMUST00000156236 (Gm15286-001) 111580261-111644830 processed_transcript
ENSMUSG00000086870 (Gm15288)
predicted gene 15288 		ENSMUST00000126640 (Gm15288-001) 111561372-111568553 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00089Y_0001ENSG00000062194ENST00000264779ENST00000309096ENST00000424459ENST00000506184ENST00000511209ENST00000513524ENST00000513732ENST00000514387ENST00000515484ENSG00000169067ENST00000423391ENSG00000207293ENST00000384563ENSG00000248294ENST00000513392ENSG00000248586ENST00000510053ENSG00000249436ENST00000509844ENSG00000250308ENST00000510352ENSG00000250961ENST00000506106CIL_00089Y_0002ENSMUSG00000032745ENSMUST00000047627ENSMUST00000091236ENSMUST00000129638ENSMUST00000136471ENSMUST00000143331ENSMUST00000156221ENSMUSG00000055194ENSMUST00000054716ENSMUSG00000081277ENSMUST00000119271ENSMUSG00000082258ENSMUST00000117793ENSMUSG00000085634ENSMUST00000132880ENSMUSG00000086201ENSMUST00000132731ENSMUSG00000086649ENSMUST00000150623ENSMUST00000156236ENSMUSG00000086870ENSMUST00000126640
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00089Y_0001ENSG00000062194ENST00000264779ENST00000424459ENST00000506184ENST00000511209ENST00000514387ENSG00000169067ENST00000423391ENSG00000207293ENST00000384563ENSG00000248294ENST00000513392ENSG00000248586ENST00000510053ENSG00000249436ENST00000509844ENSG00000250308ENST00000510352ENSG00000250961ENST00000506106CIL_00089Y_0002ENSMUSG00000032745ENSMUST00000047627ENSMUST00000091236ENSMUST00000129638ENSMUST00000136471ENSMUST00000156221ENSMUSG00000055194ENSMUST00000054716ENSMUSG00000081277ENSMUST00000119271ENSMUSG00000082258ENSMUST00000117793ENSMUSG00000085634ENSMUST00000132880ENSMUSG00000086201ENSMUST00000132731ENSMUSG00000086649ENSMUST00000150623ENSMUST00000156236ENSMUSG00000086870ENSMUST00000126640
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000062194 ENST00000264779 10.939±0.00 15.931±0.00 N/A 17.378±0.00 10.335±0.00 18.090±0.00 4.491±0.00 8.199±4.95 5.423±0.00 12.375±8.81 5.952±0.00 14.234±4.24 9.796±5.88 38.724±12.87
ENST00000309096 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424459 N/A N/A N/A 2.513±0.12 1.525±0.16 1.779±0.00 0.891±0.00 0.615±0.00 N/A 1.862±0.29 0.650±0.00 4.165±1.34 1.237±0.17 5.362±0.00
ENST00000506184 7.559±0.00 5.677±0.00 2.480±0.00 5.930±0.00 3.358±0.15 6.167±0.46 4.505±2.30 7.344±0.00 3.888±1.84 8.938±0.00 5.260±1.27 5.249±1.22 6.209±2.54 22.547±12.95
ENST00000511209 N/A N/A N/A 3.602±0.00 N/A N/A N/A N/A N/A 3.240±0.00 N/A N/A N/A N/A
ENST00000513524 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514387 3.347±0.00 4.370±0.00 2.243±0.00 4.923±2.03 4.296±0.00 3.056±0.00 3.174±0.00 3.174±2.37 1.318±0.00 5.395±0.00 2.510±0.00 5.174±2.03 2.548±0.89 10.245±0.00
ENST00000515484 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000169067 ENST00000423391 N/A N/A N/A N/A 0.010±0.00 0.036±0.00 N/A N/A 0.204±0.00 N/A N/A 0.003±0.00 0.014±0.00 N/A
ENSG00000207293 ENST00000384563 N/A N/A N/A N/A N/A 0.836±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000248294 ENST00000513392 N/A N/A N/A N/A 0.326±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.268±1.24
ENSG00000248586 ENST00000510053 N/A N/A N/A N/A N/A 0.071±0.00 0.027±0.00 N/A N/A N/A N/A 0.011±0.00 N/A 0.007±0.00
ENSG00000249436 ENST00000509844 N/A N/A N/A 1.971±0.73 0.673±0.00 N/A N/A N/A N/A 0.082±0.00 N/A N/A N/A 0.271±0.00
ENSG00000250308 ENST00000510352 N/A N/A N/A 0.023±0.00 0.096±0.00 N/A 0.015±0.00 0.094±0.00 0.128±0.00 0.050±0.00 N/A N/A N/A N/A
ENSG00000250961 ENST00000506106 N/A N/A N/A 0.094±0.00 1.432±0.00 0.036±0.00 N/A 0.013±0.00 N/A N/A N/A 0.031±0.00 0.078±0.03 0.322±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032745 ENSMUST00000047627 1.780±0.50 0.564±0.05 6.288±0.17 9.780±2.16 1.538±0.49 0.670±0.20 0.896±0.09 1.482±0.32 3.913±3.09 1.678±0.45 7.608±1.30 4.373±4.94 15.319±4.33 14.166±5.47
ENSMUST00000091236 1.318±0.36 0.402±0.01 4.751±1.49 5.408±1.24 0.679±0.24 0.803±0.32 1.652±0.66 0.848±0.37 3.182±2.28 1.546±0.44 3.501±0.94 5.118±3.54 13.871±2.67 9.376±3.62
ENSMUST00000129638 N/A N/A N/A 29.592±0.00 N/A N/A N/A N/A N/A N/A N/A 26.237±24.74 86.894±9.62 67.162±0.00
ENSMUST00000136471 0.840±0.00 0.412±0.02 6.844±0.00 8.598±6.37 0.903±0.22 0.787±0.25 0.997±0.12 0.973±0.33 2.930±2.34 1.192±0.30 3.584±0.68 5.913±9.15 28.310±18.71 37.049±0.00
ENSMUST00000143331 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156221 N/A N/A N/A N/A N/A 1.015±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000055194 ENSMUST00000054716 0.030±0.02 0.054±0.00 0.027±0.01 0.012±0.01 0.016±0.00 N/A N/A N/A 0.003±0.00 0.018±0.00 0.048±0.00 0.032±0.03 0.008±0.00 0.020±0.01
ENSMUSG00000081277 ENSMUST00000119271 N/A N/A N/A 0.093±0.00 N/A N/A 0.106±0.00 N/A N/A N/A N/A 0.187±0.00 N/A N/A
ENSMUSG00000082258 ENSMUST00000117793 N/A N/A N/A N/A N/A N/A N/A N/A 0.538±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000085634 ENSMUST00000132880 N/A N/A N/A N/A 0.125±0.00 N/A N/A N/A 0.272±0.06 N/A N/A N/A N/A 0.086±0.01
ENSMUSG00000086201 ENSMUST00000132731 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.238±0.18 N/A 0.090±0.01
ENSMUSG00000086649 ENSMUST00000150623 N/A N/A N/A N/A N/A 0.221±0.08 N/A N/A N/A N/A N/A 0.320±0.25 0.056±0.00 0.163±0.13
ENSMUST00000156236 N/A N/A N/A N/A N/A 0.326±0.00 N/A N/A N/A N/A N/A 0.459±0.15 1.043±0.36 0.633±0.24
ENSMUSG00000086870 ENSMUST00000126640 N/A 0.181±0.02 N/A 0.105±0.00 0.109±0.02 0.213±0.06 0.051±0.00 0.134±0.08 0.086±0.00 0.206±0.14 N/A 0.639±0.28 0.097±0.00 0.231±0.06

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