C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GC-rich promoter binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000136471 Gpbp1-003 ENSMUSG00000032745 10090 - 13:111426158-111487712 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000136471
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000136471 0.840±0.00 0.412±0.02 6.844±0.00 8.598±6.37 0.903±0.22 0.787±0.25 0.997±0.12 0.973±0.33 2.930±2.34 1.192±0.30 3.584±0.68 5.913±9.15 28.310±18.71 37.049±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089Y CIL_00089Y_0002 VISTA 13:111045678-111646779

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0045893 IDA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264779 GPBP1-002 protein_coding Homo_sapiens 0 1975
ENST00000309096 GPBP1-008 retained_intron Homo_sapiens 0 780
ENST00000424459 GPBP1-001 protein_coding Homo_sapiens 0 1886
ENST00000506184 GPBP1-003 protein_coding Homo_sapiens 0 1969
ENST00000510606 RP11-781M16.1-001 processed_pseudogene Homo_sapiens 0 448
ENST00000511209 GPBP1-006 protein_coding Homo_sapiens 0 1369
ENST00000513524 GPBP1-004 retained_intron Homo_sapiens 0 558
ENST00000514387 GPBP1-005 protein_coding Homo_sapiens 0 1975
ENST00000515484 GPBP1-009 retained_intron Homo_sapiens 0 582

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