C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin filament associated protein 1-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120472 Afap1l1-001 ENSMUSG00000033032 10090 - 18:61730261-61786702 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000120472
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000120472 13.107±4.02 5.210±1.66 4.345±0.17 3.905±1.87 6.792±2.78 4.803±2.30 23.573±1.77 8.850±1.06 1.585±0.89 70.997±9.44 16.540±0.81 4.831±2.04 16.105±15.66 1.121±0.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000851 CIL_000851_0002 VISTA 18:61337492-61938739
CIL_0007ZC CIL_0007ZC_0002 VISTA 18:61351102-61954077
CIL_0001B2 CIL_0001B2_0002 CGP 18:61712440-61786702
CIL_0001F8 CIL_0001F8_0002 CGP 18:61730261-61911852

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0008150 ND biological_process
GO:0030054 IEA cell junction
GO:0042995 IEA cell projection

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296721 AFAP1L1-001 protein_coding Homo_sapiens 0 2577
ENST00000455574 AFAP1L1-003 retained_intron Homo_sapiens 0 1136
ENST00000513665 AFAP1L1-004 retained_intron Homo_sapiens 0 1445
ENST00000515000 AFAP1L1-002 protein_coding Homo_sapiens 0 2398
ENST00000522492 AFAP1L1-006 processed_transcript Homo_sapiens 0 359

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