C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: autophagy related 9A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033124 Atg9a 10090 - 1:75180860-75192196 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040689 Atg9a-201 75180866-75191923 protein_coding
  ENSMUST00000186744 Atg9a-006 75190117-75191714 protein_coding
  ENSMUST00000187601 Atg9a-007 75189769-75191962 retained_intron
  ENSMUST00000187785 Atg9a-008 75182990-75186047 protein_coding
  ENSMUST00000188347 Atg9a-001 75180865-75192196 protein_coding
  ENSMUST00000188430 Atg9a-004 75187557-75191725 retained_intron
  ENSMUST00000189665 Atg9a-003 75180865-75191923 nonsense_mediated_decay
  ENSMUST00000189702 Atg9a-002 75180860-75191926 protein_coding
  ENSMUST00000189820 Atg9a-005 75180865-75190382 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040689ENSMUST00000188347ENSMUST00000189665ENSMUST00000189702
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040689 22.636±3.33 18.872±1.78 17.964±0.46 22.706±13.05 24.373±6.60 29.217±1.98 27.614±1.12 26.619±2.91 21.893±4.82 23.037±2.59 28.895±2.61 21.213±5.08 10.937±2.94 114.858±8.24
ENSMUST00000188347 9.465±0.00 11.941±0.37 N/A 5.473±0.00 8.927±1.59 15.026±1.24 6.094±0.32 15.622±2.36 9.448±0.88 9.956±0.34 17.189±2.16 10.213±0.90 11.354±0.00 N/A
ENSMUST00000189665 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.241±0.00 N/A
ENSMUST00000189702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 82.972±39.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0002 VISTA 1:75047166-75647630
CIL_0006EA CIL_0006EA_0002 CGP 1:75171717-75192196
CIL_0006EI CIL_0006EI_0002 CGP 1:75180860-75199387

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000045 IBA autophagic vacuole assembly
GO:0000407 IBA pre-autophagosomal structure
GO:0000422 IBA mitochondrion degradation
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005768 ISO endosome
GO:0005770 IEA late endosome
GO:0005776 IDA autophagic vacuole
GO:0005802 ISO trans-Golgi network
GO:0006914 IMP autophagy
GO:0016021 IBA integral component of membrane
GO:0034067 IMP protein localization to Golgi apparatus
GO:0034497 IBA protein localization to pre-autophagosomal structure
GO:0034727 IBA piecemeal microautophagy of nucleus
GO:0044805 IBA late nucleophagy
GO:0045087 IMP innate immune response
GO:0055037 IEA recycling endosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044551 atg9a ATG9 autophagy related 9 homolog A (S. cerevisiae) protein_coding Danio_rerio
ENSG00000198925 ATG9A autophagy related 9A protein_coding Homo_sapiens

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