C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: autophagy related 9A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000198925 ATG9A 9606 - 2:219209772-219229717 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000361242 ATG9A-003 219220054-219229670 protein_coding
  ENST00000396761 ATG9A-001 219219380-219229717 protein_coding
  ENST00000409033 ATG9A-002 219219380-219229626 nonsense_mediated_decay
  ENST00000409422 ATG9A-021 219220447-219229629 protein_coding
  ENST00000409618 ATG9A-004 219219382-219229368 protein_coding
  ENST00000412355 ATG9A-011 219225146-219229636 nonsense_mediated_decay
  ENST00000428226 ATG9A-012 219225078-219229618 protein_coding
  ENST00000429920 ATG9A-023 219221274-219223964 protein_coding
  ENST00000431715 ATG9A-010 219224683-219229639 protein_coding
  ENST00000432520 ATG9A-016 219225153-219229342 protein_coding
  ENST00000434939 ATG9A-019 219225506-219228693 protein_coding
  ENST00000436856 ATG9A-013 219224808-219229618 protein_coding
  ENST00000439812 ATG9A-009 219225194-219229639 protein_coding
  ENST00000443140 ATG9A-018 219225494-219229325 protein_coding
  ENST00000446716 ATG9A-006 219209772-219222738 nonsense_mediated_decay
  ENST00000455079 ATG9A-020 219225415-219229639 nonsense_mediated_decay
  ENST00000456708 ATG9A-007 219225196-219229639 nonsense_mediated_decay
  ENST00000457841 ATG9A-008 219225071-219229639 protein_coding
  ENST00000466217 ATG9A-015 219225332-219229594 retained_intron
  ENST00000475339 ATG9A-022 219220209-219222248 retained_intron
  ENST00000486766 ATG9A-014 219225415-219229606 retained_intron
  ENST00000488833 ATG9A-017 219226874-219229340 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361242ENST00000396761ENST00000409033ENST00000409422ENST00000409618ENST00000436856ENST00000439812ENST00000446716ENST00000457841
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361242 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.487±0.00 N/A N/A N/A N/A
ENST00000396761 14.705±0.00 10.866±0.00 N/A 8.336±5.27 6.363±3.23 6.315±0.00 9.710±8.51 8.397±0.00 12.064±0.00 7.411±6.47 47.874±43.63 13.324±1.56 11.452±1.13 18.818±0.00
ENST00000409033 9.829±0.00 N/A N/A 4.761±3.14 8.617±0.00 7.539±0.00 6.368±0.00 4.757±0.76 N/A N/A 33.022±0.00 5.786±2.76 6.626±1.11 15.953±2.15
ENST00000409422 N/A N/A 2.202±0.00 N/A N/A 2.051±0.00 1.335±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000409618 N/A N/A N/A 8.543±0.00 4.211±0.00 4.130±0.00 4.058±0.00 5.550±0.00 N/A N/A N/A 8.067±0.00 9.458±2.04 35.943±1.05
ENST00000436856 N/A N/A 3.884±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439812 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.519±0.00 N/A N/A N/A N/A
ENST00000446716 N/A 6.222±0.00 N/A N/A N/A N/A N/A N/A N/A 3.001±0.00 N/A N/A N/A N/A
ENST00000457841 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.321±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0001 VISTA 2:219106772-219707284
CIL_0006EB CIL_0006EB_0001 CGP 2:219195237-219218990
CIL_0006EA CIL_0006EA_0001 CGP 2:219209768-219229717
CIL_0006EI CIL_0006EI_0001 CGP 2:219209772-219236669

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000045 IMP autophagic vacuole assembly
GO:0000407 IBA pre-autophagosomal structure
GO:0000422 IBA mitochondrion degradation
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005768 IDA endosome
GO:0005770 IDA late endosome
GO:0005776 IBA autophagic vacuole
GO:0005783 IEA endoplasmic reticulum
GO:0005802 IDA trans-Golgi network
GO:0006914 IEA autophagy
GO:0015002 IEA heme-copper terminal oxidase activity
GO:0015031 IEA protein transport
GO:0016020 IDA:IEA membrane
GO:0016021 IBA integral component of membrane
GO:0031410 IEA cytoplasmic vesicle
GO:0034067 IEA protein localization to Golgi apparatus
GO:0034497 IBA protein localization to pre-autophagosomal structure
GO:0034727 IBA piecemeal microautophagy of nucleus
GO:0044805 IBA late nucleophagy
GO:0045087 IEA innate immune response
GO:0055037 IDA recycling endosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044551 atg9a ATG9 autophagy related 9 homolog A (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000033124 Atg9a autophagy related 9A protein_coding Mus_musculus

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