C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATPase, H+ transporting, lysosomal V0 subunit B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000036380 Atp6v0b-001 ENSMUSG00000033379 10090 - 4:117884326-117887329 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000036380
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036380 141.954±10.72 303.821±15.52 99.018±30.41 136.035±62.57 120.114±31.37 189.433±33.23 92.296±10.59 278.323±10.04 113.214±16.47 171.294±21.41 57.883±3.25 108.527±39.72 114.395±68.89 81.395±11.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SF CIL_0008SF_0002 VISTA 4:117346906-117947610
CIL_0009B8 CIL_0009B8_0002 VISTA 4:117528714-118131599
CIL_000029 CIL_000029_0002 CGP 4:117869260-117887333

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005768 IDA endosome
GO:0008553 ISA hydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0015991 ISA ATP hydrolysis coupled proton transport
GO:0016021 IDA integral component of membrane
GO:0016471 ISA vacuolar proton-transporting V-type ATPase complex
GO:0033179 IEA proton-transporting V-type ATPase, V0 domain

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000236067 ATP6V0B-004 protein_coding Homo_sapiens 0 989
ENST00000461670 ATP6V0B-009 nonsense_mediated_decay Homo_sapiens 0 292
ENST00000468183 ATP6V0B-003 retained_intron Homo_sapiens 0 693
ENST00000471859 ATP6V0B-006 protein_coding Homo_sapiens 0 693
ENST00000472174 ATP6V0B-001 protein_coding Homo_sapiens 0 1168
ENST00000472277 ATP6V0B-008 processed_transcript Homo_sapiens 0 329
ENST00000473485 ATP6V0B-002 retained_intron Homo_sapiens 0 1051
ENST00000496131 ATP6V0B-010 retained_intron Homo_sapiens 0 344
ENST00000498208 ATP6V0B-007 nonsense_mediated_decay Homo_sapiens 0 255
ENST00000498664 ATP6V0B-011 protein_coding Homo_sapiens 0 989
ENST00000532642 ATP6V0B-012 protein_coding Homo_sapiens 0 802

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