C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: La ribonucleoprotein domain family, member 4B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000091829 Larp4b-002 ENSMUSG00000033499 10090 + 13:9093982-9174451 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000091829
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000091829 5.255±2.72 7.559±3.01 10.054±0.09 8.801±1.43 3.378±0.85 9.259±0.88 2.185±1.27 2.232±0.32 7.646±4.49 5.318±4.21 6.555±3.53 2.304±0.63 5.860±2.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001NT CIL_0001NT_0002 CGP 13:9093881-9668928

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005829 ISS cytosol
GO:0010494 ISS cytoplasmic stress granule
GO:0042788 ISS polysomal ribosome
GO:0045727 ISS positive regulation of translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000316157 LARP4B-002 protein_coding Homo_sapiens 0 1535
ENST00000406525 LARP4B-003 protein_coding Homo_sapiens 0 394
ENST00000412411 LARP4B-004 protein_coding Homo_sapiens 0 294
ENST00000440895 LARP4B-008 protein_coding Homo_sapiens 0 320
ENST00000448368 LARP4B-007 protein_coding Homo_sapiens 0 536
ENST00000476529 LARP4B-005 nonsense_mediated_decay Homo_sapiens 0 339
ENST00000481118 LARP4B-006 processed_transcript Homo_sapiens 0 316
ENST00000608970 LARP4B-009 retained_intron Homo_sapiens 0 320
ENST00000609318 LARP4B-010 retained_intron Homo_sapiens 0 1072
ENST00000612396 LARP4B-201 protein_coding Homo_sapiens 0 1692
ENST00000614908 LARP4B-011 protein_coding Homo_sapiens 0 346

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