C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: La ribonucleoprotein domain family, member 4B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000188211 Larp4b-001 ENSMUSG00000033499 10090 + 13:9093881-9171104 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonLiverLungOvaryPlacentaTestisENSMUST00000188211
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Liver Lung Ovary Placenta Testis
ENSMUST00000188211 7.628±0.95 5.030±1.12 4.841±0.00 5.759±1.14 4.468±1.36 6.905±1.51 5.864±1.98 5.632±0.60 5.277±2.45 11.726±1.61 2.479±0.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001NT CIL_0001NT_0002 CGP 13:9093881-9668928

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005829 ISS cytosol
GO:0010494 ISS cytoplasmic stress granule
GO:0016020 IEA membrane
GO:0042788 ISS polysomal ribosome
GO:0044822 IEA poly(A) RNA binding
GO:0045727 ISS positive regulation of translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000316157 LARP4B-002 protein_coding Homo_sapiens 0 2599
ENST00000406525 LARP4B-003 protein_coding Homo_sapiens 0 394
ENST00000412411 LARP4B-004 protein_coding Homo_sapiens 0 294
ENST00000440895 LARP4B-008 protein_coding Homo_sapiens 0 320
ENST00000448368 LARP4B-007 protein_coding Homo_sapiens 0 682
ENST00000476529 LARP4B-005 nonsense_mediated_decay Homo_sapiens 0 339
ENST00000481118 LARP4B-006 processed_transcript Homo_sapiens 0 316
ENST00000608970 LARP4B-009 retained_intron Homo_sapiens 0 320
ENST00000609318 LARP4B-010 retained_intron Homo_sapiens 0 667
ENST00000612396 LARP4B-201 protein_coding Homo_sapiens 0 2867
ENST00000614908 LARP4B-011 protein_coding Homo_sapiens 0 346

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