C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Rho GTPase activating protein 39
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033697 Arhgap39 10090 - 15:76723985-76818170 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000036176 Arhgap39-002 76723985-76818083 protein_coding
  ENSMUST00000077821 Arhgap39-001 76723985-76818170 protein_coding
  ENSMUST00000175843 Arhgap39-004 76765522-76817970 protein_coding
  ENSMUST00000176219 Arhgap39-009 76758041-76818106 protein_coding
  ENSMUST00000176724 Arhgap39-010 76724860-76725603 retained_intron
  ENSMUST00000176736 Arhgap39-005 76765538-76818076 protein_coding
  ENSMUST00000176855 Arhgap39-007 76751677-76794825 protein_coding
  ENSMUST00000177011 Arhgap39-003 76733457-76818129 retained_intron
  ENSMUST00000177026 Arhgap39-008 76758045-76817996 protein_coding
  ENSMUST00000177255 Arhgap39-006 76765072-76818141 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000036176ENSMUST00000077821ENSMUST00000177011
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036176 2.384±1.20 1.529±0.79 2.357±0.15 N/A 2.071±0.00 3.577±1.02 0.468±0.00 1.712±0.63 1.667±0.96 2.879±0.38 0.749±0.14 4.265±0.42 5.825±1.64 3.450±0.98
ENSMUST00000077821 3.077±1.51 5.658±1.54 0.874±0.03 17.038±10.43 3.713±2.01 10.751±2.60 1.143±0.43 1.339±0.48 1.132±0.59 3.788±1.82 0.260±0.06 11.330±2.67 1.306±0.13 4.341±2.10
ENSMUST00000177011 N/A N/A N/A 5.081±0.00 N/A N/A N/A N/A N/A N/A 0.206±0.00 3.244±0.30 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099W CIL_00099W_0002 VISTA 15:76709335-77309403
CIL_0000VV CIL_0000VV_0002 CGP 15:76723985-76871435

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0005856 IEA cytoskeleton
GO:0007165 IEA signal transduction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000073853 arhgap39 Rho GTPase activating protein 39 protein_coding Danio_rerio
ENSG00000147799 ARHGAP39 Rho GTPase activating protein 39 protein_coding Homo_sapiens

Loading