C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Rho GTPase activating protein 39
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000147799 ARHGAP39 9606 - 8:144529179-144605816 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000276826 ARHGAP39-001 144529179-144605816 protein_coding
  ENST00000377307 ARHGAP39-002 144529179-144605699 protein_coding
  ENST00000528810 ARHGAP39-003 144537758-144545664 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000276826ENST00000377307ENST00000528810
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000276826 0.445±0.00 0.211±0.00 5.522±4.51 0.894±0.00 0.527±0.44 0.055±0.00 N/A 0.114±0.00 0.965±0.91 0.039±0.00 0.363±0.00 0.153±0.00 11.519±0.00
ENST00000377307 N/A 0.484±0.00 1.438±1.04 0.494±0.15 0.312±0.08 0.510±0.00 2.083±0.00 0.168±0.00 1.193±0.00 N/A 3.484±3.01 0.984±0.37 13.811±1.84
ENST00000528810 N/A N/A N/A N/A N/A N/A 1.188±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00064F CIL_00064F_0002 CGP 8:144525733-144605816
CIL_0000VV CIL_0000VV_0001 CGP 8:144529179-144756417

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0005856 IEA cytoskeleton
GO:0007165 IEA signal transduction
GO:0007264 TAS small GTPase mediated signal transduction
GO:0007411 TAS axon guidance
GO:0051056 TAS regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000073853 arhgap39 Rho GTPase activating protein 39 protein_coding Danio_rerio
ENSMUSG00000033697 Arhgap39 Rho GTPase activating protein 39 protein_coding Mus_musculus

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