C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: SET and MYND domain containing 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000152218 Smyd5-002 ENSMUSG00000033706 10090 + 6:85432002-85440342 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryENSMUST00000152218
Transcript ID Ovary
ENSMUST00000152218 8.973±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087O CIL_00087O_0002 VISTA 6:84864955-85466474
CIL_0008RW CIL_0008RW_0002 VISTA 6:84918005-85518946
CIL_0003EF CIL_0003EF_0002 CGP 6:85423886-85446435
CIL_0003EK CIL_0003EK_0002 CGP 6:85431989-85451970

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258100 SMYD5-002 nonsense_mediated_decay Homo_sapiens 0 514
ENST00000389501 SMYD5-001 protein_coding Homo_sapiens 0 614
ENST00000413491 SMYD5-003 nonsense_mediated_decay Homo_sapiens 0 361
ENST00000443900 SMYD5-004 protein_coding Homo_sapiens 0 462
ENST00000474652 SMYD5-005 processed_transcript Homo_sapiens 0 381
ENST00000491204 SMYD5-006 processed_transcript Homo_sapiens 0 257

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