C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET and MYND domain containing 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000045693 Smyd5-001 ENSMUSG00000033706 10090 + 6:85431989-85446435 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045693
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045693 13.259±3.49 13.251±0.71 7.386±1.17 14.391±6.24 10.021±1.03 6.824±0.48 4.098±1.37 7.163±0.77 9.315±3.35 8.183±0.40 3.016±0.23 19.196±6.22 13.431±5.09 3.963±0.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087O CIL_00087O_0002 VISTA 6:84864955-85466474
CIL_0008RW CIL_0008RW_0002 VISTA 6:84918005-85518946
CIL_0003EF CIL_0003EF_0002 CGP 6:85423886-85446435
CIL_0003EK CIL_0003EK_0002 CGP 6:85431989-85451970

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008168 IEA methyltransferase activity
GO:0032259 IEA methylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258100 SMYD5-002 nonsense_mediated_decay Homo_sapiens 0 719
ENST00000389501 SMYD5-001 protein_coding Homo_sapiens 0 1526
ENST00000413491 SMYD5-003 nonsense_mediated_decay Homo_sapiens 0 361
ENST00000443900 SMYD5-004 protein_coding Homo_sapiens 0 462
ENST00000474652 SMYD5-005 processed_transcript Homo_sapiens 0 433
ENST00000486518 SMYD5-008 processed_transcript Homo_sapiens 0 219
ENST00000491204 SMYD5-006 processed_transcript Homo_sapiens 0 257

Loading