C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: forkhead box N3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033713 Foxn3 10090 - 12:99194980-99450111 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000046859 Foxn3-001 99194980-99393797 protein_coding
  ENSMUST00000085108 Foxn3-201 99195094-99450074 protein_coding
  ENSMUST00000176311 Foxn3-003 99291264-99357019 processed_transcript
  ENSMUST00000176829 Foxn3-004 99209503-99291277 protein_coding
  ENSMUST00000176928 Foxn3-008 99388439-99450111 protein_coding
  ENSMUST00000176959 Foxn3-002 99196787-99291278 protein_coding
  ENSMUST00000177269 Foxn3-007 99341503-99412605 protein_coding
  ENSMUST00000177287 Foxn3-006 99387405-99450097 retained_intron
  ENSMUST00000177451 Foxn3-005 99195094-99393072 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000046859ENSMUST00000085108ENSMUST00000176928ENSMUST00000177269ENSMUST00000177451
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000046859 N/A N/A 2.679±0.00 1.089±0.28 N/A N/A 1.898±0.00 N/A 0.683±0.11 N/A 4.588±3.64 10.609±0.00 0.257±0.07
ENSMUST00000085108 4.829±0.00 6.312±0.00 1.477±0.00 2.001±0.00 4.668±1.92 N/A 1.890±0.73 N/A 2.520±1.73 N/A 2.349±0.00 3.495±2.23 0.671±0.00
ENSMUST00000176928 15.912±0.00 N/A N/A 5.183±0.00 21.645±7.47 18.375±1.27 12.613±1.55 17.994±2.73 8.603±0.96 27.885±0.00 34.097±4.86 N/A 2.913±0.44
ENSMUST00000177269 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.745±0.00 N/A
ENSMUST00000177451 4.357±1.50 6.257±0.33 2.808±0.00 2.204±0.00 4.426±1.99 9.030±1.11 2.879±0.48 2.470±0.90 1.776±1.14 5.325±0.77 7.051±2.29 N/A 1.100±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004KI CIL_0004KI_0002 CGP 12:98920574-99450111
CIL_0008PB CIL_0008PB_0002 VISTA 12:99038620-99641271
CIL_0008OO CIL_0008OO_0002 VISTA 12:99039106-99641370
CIL_0005C7 CIL_0005C7_0002 CGP 12:99194980-99883442

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007049 IEA cell cycle
GO:0007095 IEA mitotic G2 DNA damage checkpoint
GO:0008022 IEA protein C-terminus binding
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 IEA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012833 foxn3 forkhead box N3 protein_coding Danio_rerio
ENSG00000053254 FOXN3 forkhead box N3 protein_coding Homo_sapiens

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