C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008PB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm12 VISTA 9606 14:89047550-89650536
GeneTranscriptPositionBiotype
ENSG00000053254 (FOXN3)
forkhead box N3 		ENST00000261302 (FOXN3-201) 89161361-89412492 protein_coding
ENST00000345097 (FOXN3-003) 89156172-89619130 protein_coding
ENST00000553353 (FOXN3-017) 89190382-89401665 protein_coding
ENST00000553840 (FOXN3-009) 89162878-89412025 protein_coding
ENST00000553904 (FOXN3-006) 89412313-89494185 protein_coding
ENST00000554005 (FOXN3-016) 89280950-89412035 nonsense_mediated_decay
ENST00000555010 (FOXN3-015) 89180759-89223342 processed_transcript
ENST00000555034 (FOXN3-007) 89412197-89494051 protein_coding
ENST00000555353 (FOXN3-001) 89162362-89619149 protein_coding
ENST00000555658 (FOXN3-010) 89263593-89350791 processed_transcript
ENST00000555855 (FOXN3-005) 89350728-89619137 protein_coding
ENST00000556541 (FOXN3-013) 89180756-89185873 processed_transcript
ENST00000556916 (FOXN3-012) 89230728-89412058 protein_coding
ENST00000557258 (FOXN3-004) 89161385-89417112 protein_coding
ENST00000557261 (FOXN3-008) 89349533-89351321 processed_transcript
ENST00000557496 (FOXN3-014) 89180788-89184154 processed_transcript
ENST00000557572 (FOXN3-018) 89124871-89180744 protein_coding
ENST00000557718 (FOXN3-011) 89180790-89412017 nonsense_mediated_decay
ENST00000615335 (FOXN3-202) 89161400-89412476 protein_coding
ENSG00000201027 (RN7SKP107)
RNA, 7SK small nuclear pseudogene 107 		ENST00000364157 (RN7SKP107-201) 89621918-89622207 misc_RNA
ENSG00000258380 (RP11-33N16.2)
 ENST00000556383 (RP11-33N16.2-001) 89399995-89409469 antisense
ENSG00000258699 (RP11-356K23.2)
 ENST00000556926 (RP11-356K23.2-001) 89355060-89356571 antisense
ENSG00000258752 (RP11-356K23.1)
 ENST00000555407 (RP11-356K23.1-001) 89350285-89353793 antisense
ENST00000556942 (RP11-356K23.1-002) 89350302-89364699 antisense
ENSG00000258792 (RP11-944C7.1)
 ENST00000550332 (RP11-944C7.1-002) 89628921-89631566 lincRNA
ENST00000553996 (RP11-944C7.1-001) 89628921-89642671 lincRNA
ENST00000555560 (RP11-944C7.1-003) 89628941-89634082 lincRNA
ENSG00000258920 (FOXN3-AS1)
FOXN3 antisense RNA 1 		ENST00000555562 (FOXN3-AS1-001) 89417354-89419793 antisense
ENSG00000258990 (MPPE1P1)
metallophosphoesterase 1 pseudogene 1 		ENST00000557286 (MPPE1P1-001) 89110148-89111223 processed_pseudogene
ENSG00000259073 (FOXN3-AS2)
FOXN3 antisense RNA 2 		ENST00000554071 (FOXN3-AS2-001) 89576216-89577477 antisense
ENSG00000259151 (CAP2P1)
CAP, adenylate cyclase-associated protein, 2 (yeast) pseudogene 1 		ENST00000557743 (CAP2P1-001) 89290205-89291594 transcribed_processed_pseudogene
ENSG00000277801 (RP11-681H18.2)
 ENST00000612252 (RP11-681H18.2-001) 89156743-89157574 lincRNA
CIL_0008PB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm12 VISTA 10090 12:99038620-99641271
GeneTranscriptPositionBiotype
ENSMUSG00000033713 (Foxn3)
forkhead box N3 		ENSMUST00000046859 (Foxn3-001) 99194980-99393797 protein_coding
ENSMUST00000085108 (Foxn3-201) 99195094-99450074 protein_coding
ENSMUST00000176311 (Foxn3-003) 99291264-99357019 processed_transcript
ENSMUST00000176829 (Foxn3-004) 99209503-99291277 protein_coding
ENSMUST00000176928 (Foxn3-008) 99388439-99450111 protein_coding
ENSMUST00000176959 (Foxn3-002) 99196787-99291278 protein_coding
ENSMUST00000177269 (Foxn3-007) 99341503-99412605 protein_coding
ENSMUST00000177287 (Foxn3-006) 99387405-99450097 retained_intron
ENSMUST00000177451 (Foxn3-005) 99195094-99393072 protein_coding
ENSMUSG00000033731 (3300002A11Rik)
RIKEN cDNA 3300002A11 gene 		ENSMUST00000046994 (3300002A11Rik-001) 99346398-99361827 antisense
ENSMUST00000126476 (3300002A11Rik-002) 99341154-99361827 antisense
ENSMUSG00000062582 (Rpl30-ps8)
ribosomal protein L30, pseudogene 8 		ENSMUST00000076166 (Rpl30-ps8-201) 99047230-99047577 processed_pseudogene
ENSMUSG00000093419 (Gm19898)
predicted gene, 19898 		ENSMUST00000177490 (Gm19898-001) 99245671-99245921 processed_pseudogene
ENSMUSG00000093465 (Gm20682)
predicted gene 20682 		ENSMUST00000176552 (Gm20682-001) 99292608-99296620 processed_transcript
ENSMUSG00000097917 (Gm26839)
predicted gene, 26839 		ENSMUST00000180686 (Gm26839-201) 99563841-99620038 lincRNA
ENSMUSG00000099597 (RP24-69I6.1)
predicted gene 28933 		ENSMUST00000185441 (RP24-69I6.1-001) 99190078-99191484 lincRNA
ENSMUSG00000100211 (RP24-342G5.1)
RIKEN cDNA 1700064M15 gene 		ENSMUST00000185726 (RP24-342G5.1-001) 99626053-99627974 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008PB_0001ENSG00000053254ENST00000261302ENST00000345097ENST00000555353ENST00000615335ENSG00000201027ENST00000364157ENSG00000258380ENST00000556383ENSG00000258699ENST00000556926ENSG00000258752ENST00000555407ENST00000556942ENSG00000258792ENST00000550332ENST00000555560ENSG00000258920ENST00000555562ENSG00000258990ENST00000557286ENSG00000259073ENST00000554071ENSG00000259151ENST00000557743ENSG00000277801ENST00000612252CIL_0008PB_0002ENSMUSG00000033713ENSMUST00000046859ENSMUST00000085108ENSMUST00000176928ENSMUST00000177269ENSMUST00000177451ENSMUSG00000033731ENSMUST00000046994ENSMUST00000126476ENSMUSG00000062582ENSMUST00000076166ENSMUSG00000093419ENSMUST00000177490ENSMUSG00000093465ENSMUST00000176552ENSMUSG00000097917ENSMUST00000180686ENSMUSG00000099597ENSMUST00000185441ENSMUSG00000100211ENSMUST00000185726
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000053254 ENST00000261302 N/A N/A N/A N/A N/A N/A 2.963±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000345097 N/A 5.271±0.00 N/A 4.276±0.00 14.636±6.60 6.643±0.00 6.678±0.00 3.401±0.00 1.746±0.00 7.806±0.00 5.900±0.00 2.382±0.07 4.438±3.32 7.876±3.39
ENST00000553353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553840 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554005 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555010 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555034 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555353 N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.881±0.00 6.647±0.00 N/A N/A N/A
ENST00000555658 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555855 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556541 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556916 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557258 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557261 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557496 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557572 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557718 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615335 N/A N/A N/A N/A 7.275±0.00 4.809±0.00 N/A N/A 6.998±0.00 N/A N/A N/A N/A N/A
ENSG00000201027 ENST00000364157 N/A N/A N/A N/A N/A 1.917±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000258380 ENST00000556383 N/A N/A N/A N/A 0.108±0.00 1.792±0.00 0.097±0.00 N/A 0.924±0.00 N/A N/A N/A N/A 0.243±0.00
ENSG00000258699 ENST00000556926 N/A 0.096±0.00 N/A 0.019±0.00 N/A 0.459±0.00 0.019±0.00 0.055±0.00 0.016±0.00 0.099±0.00 N/A 0.084±0.04 N/A 0.082±0.01
ENSG00000258752 ENST00000555407 0.049±0.00 0.025±0.00 N/A N/A 0.995±0.00 N/A 0.068±0.00 N/A 0.021±0.00 N/A N/A 1.025±0.96 N/A 0.490±0.30
ENST00000556942 N/A 0.161±0.00 0.716±0.00 0.823±0.00 0.186±0.09 N/A 0.085±0.06 N/A 1.623±0.00 7.997±4.49 N/A 7.273±9.50 0.140±0.00 0.450±0.35
ENSG00000258792 ENST00000550332 0.033±0.00 0.664±0.00 N/A 0.418±0.00 0.034±0.00 0.222±0.00 N/A 0.133±0.06 0.030±0.00 0.159±0.00 N/A 0.474±0.39 0.240±0.00 1.033±0.73
ENST00000553996 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555560 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.227±0.00
ENSG00000258920 ENST00000555562 1.501±0.00 2.291±0.00 0.422±0.00 0.527±0.00 2.138±0.00 0.634±0.38 0.592±0.54 0.501±0.00 0.555±0.00 1.218±0.00 0.643±0.20 1.461±1.01 0.926±0.36 0.734±0.58
ENSG00000258990 ENST00000557286 N/A 0.029±0.00 N/A N/A N/A 0.027±0.00 0.013±0.00 0.097±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000259073 ENST00000554071 0.010±0.00 0.205±0.00 0.538±0.00 0.116±0.00 0.456±0.45 0.359±0.00 0.179±0.13 0.195±0.13 0.119±0.10 1.183±0.00 0.111±0.00 0.296±0.37 0.026±0.00 0.026±0.00
ENSG00000259151 ENST00000557743 0.082±0.00 0.043±0.00 0.090±0.00 0.016±0.00 0.558±0.00 0.665±0.63 0.124±0.00 1.397±0.00 0.411±0.00 0.718±0.00 0.037±0.00 0.624±0.58 0.043±0.00 0.133±0.00
ENSG00000277801 ENST00000612252 34.258±0.00 20.568±0.00 N/A 9.499±0.00 49.869±0.00 33.624±0.00 25.854±0.00 9.675±0.00 11.937±0.00 18.405±0.00 21.578±10.01 31.328±1.66 14.154±0.98 33.464±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000033713 ENSMUST00000046859 N/A N/A 2.679±0.00 1.089±0.28 N/A N/A 1.898±0.00 N/A 0.683±0.11 N/A N/A 4.588±3.64 10.609±0.00 0.257±0.07
ENSMUST00000085108 4.829±0.00 6.312±0.00 1.477±0.00 2.001±0.00 4.668±1.92 N/A 1.890±0.73 N/A 2.520±1.73 N/A N/A 2.349±0.00 3.495±2.23 0.671±0.00
ENSMUST00000176311 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176928 15.912±0.00 N/A N/A 5.183±0.00 21.645±7.47 18.375±1.27 12.613±1.55 17.994±2.73 8.603±0.96 27.885±0.00 N/A 34.097±4.86 N/A 2.913±0.44
ENSMUST00000176959 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177269 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.745±0.00 N/A
ENSMUST00000177287 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177451 4.357±1.50 6.257±0.33 2.808±0.00 2.204±0.00 4.426±1.99 9.030±1.11 2.879±0.48 2.470±0.90 1.776±1.14 5.325±0.77 N/A 7.051±2.29 N/A 1.100±0.26
ENSMUSG00000033731 ENSMUST00000046994 N/A N/A 0.026±0.00 0.045±0.01 0.091±0.00 0.142±0.05 N/A 0.051±0.00 0.031±0.00 N/A 0.076±0.00 0.370±0.05 0.075±0.02 N/A
ENSMUST00000126476 0.149±0.02 N/A 0.353±0.10 0.072±0.00 N/A N/A 0.532±0.32 N/A N/A 8.435±1.43 N/A 6.681±3.38 N/A 0.503±0.16
ENSMUSG00000062582 ENSMUST00000076166 0.213±0.01 N/A 2.472±0.00 0.476±0.34 N/A N/A N/A N/A 1.492±1.09 N/A N/A N/A N/A N/A
ENSMUSG00000093419 ENSMUST00000177490 0.661±0.00 N/A N/A N/A N/A 1.102±0.00 N/A N/A N/A 0.503±0.01 N/A 1.140±0.23 N/A N/A
ENSMUSG00000093465 ENSMUST00000176552 0.074±0.06 0.063±0.06 0.077±0.05 0.118±0.06 0.125±0.05 0.075±0.04 0.060±0.03 0.075±0.04 0.051±0.04 0.122±0.05 0.015±0.00 0.068±0.05 0.053±0.02 0.032±0.01
ENSMUSG00000097917 ENSMUST00000180686 N/A 0.172±0.00 0.016±0.01 0.039±0.00 0.217±0.00 N/A 0.097±0.00 N/A 0.067±0.02 0.112±0.06 0.079±0.04 0.351±0.11 0.007±0.00 0.056±0.00
ENSMUSG00000099597 ENSMUST00000185441 10.861±1.36 9.311±3.16 17.530±4.83 12.952±2.98 8.317±2.53 10.932±3.62 6.553±1.09 7.699±0.69 5.017±1.89 11.654±3.99 17.000±1.15 10.991±2.50 8.254±5.06 1.497±0.66
ENSMUSG00000100211 ENSMUST00000185726 0.176±0.00 0.151±0.07 0.025±0.01 0.107±0.00 0.184±0.00 0.075±0.00 0.082±0.00 N/A N/A 0.156±0.08 0.106±0.01 0.358±0.17 0.036±0.02 51.894±21.03

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