C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: empty spiracles homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000045942 Emx1-001 ENSMUSG00000033726 10090 + 6:85187438-85204358 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainKidneyLiverOvaryPlacentaENSMUST00000045942
Transcript ID Adipose Adrenal Bladder Brain Kidney Liver Ovary Placenta
ENSMUST00000045942 0.016±0.00 0.019±0.00 0.021±0.00 13.579±8.45 24.408±5.44 0.060±0.07 0.043±0.02 0.247±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087O CIL_00087O_0002 VISTA 6:84864955-85466474
CIL_0008RW CIL_0008RW_0002 VISTA 6:84918005-85518946
CIL_0003EH CIL_0003EH_0002 CGP 6:85133678-85204462
CIL_0002DU CIL_0002DU_0003 CGP 6:85187438-85333422

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IGI in utero embryonic development
GO:0005515 IEA protein binding
GO:0005634 ISO nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007420 IMP brain development
GO:0009791 IMP post-embryonic development
GO:0021796 IGI cerebral cortex regionalization
GO:0021895 IGI cerebral cortex neuron differentiation
GO:0021987 IGI cerebral cortex development
GO:0030182 IMP neuron differentiation
GO:0042493 IDA response to drug
GO:0043565 IEA sequence-specific DNA binding
GO:0048854 IGI brain morphogenesis
GO:1990138 IGI neuron projection extension

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258106 EMX1-001 protein_coding Homo_sapiens 0 1476
ENST00000394111 EMX1-002 protein_coding Homo_sapiens 0 752
ENST00000464675 EMX1-005 retained_intron Homo_sapiens 0 752
ENST00000473732 EMX1-003 protein_coding Homo_sapiens 0 512
ENST00000491023 EMX1-004 processed_transcript Homo_sapiens 0 752
ENST00000546446 EMX2-003 processed_transcript Homo_sapiens 0 215
ENST00000553456 EMX2-001 protein_coding Homo_sapiens 0 215

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