C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA polymerase II associated protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000065422 Rpap2-007 ENSMUSG00000033773 10090 + 5:107597735-107661838 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000065422
Transcript ID Adipose Bladder Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000065422 1.888±0.64 5.495±0.46 2.072±0.00 1.222±0.26 0.762±0.00 2.520±0.65 1.287±0.31 3.084±0.37 4.962±3.50 5.581±1.25 15.538±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007CA CIL_0007CA_0003 CGP 5:107508944-107597888
CIL_0005ZN CIL_0005ZN_0002 CGP 5:107548967-107661838
CIL_0005ZO CIL_0005ZO_0002 CGP 5:107597373-107726036

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 ISS nucleus
GO:0005730 IEA nucleolus
GO:0005737 ISS cytoplasm
GO:0008420 ISS CTD phosphatase activity
GO:0009301 ISS snRNA transcription
GO:0016591 ISS DNA-directed RNA polymerase II, holoenzyme
GO:0046872 IEA metal ion binding
GO:0070940 ISS dephosphorylation of RNA polymerase II C-terminal domain

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000484158 RPAP2-002 processed_transcript Homo_sapiens 0 562
ENST00000603626 RP11-420K10.1-001 processed_pseudogene Homo_sapiens 0 250
ENST00000610020 RPAP2-001 protein_coding Homo_sapiens 0 1120

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