C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SIK family kinase 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034135 Sik3 10090 + 9:46012820-46224194 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000120247 Sik3-004 46013000-46221234 protein_coding
  ENSMUST00000120463 Sik3-005 46012864-46222275 protein_coding
  ENSMUST00000122865 Sik3-002 46123237-46202885 protein_coding
  ENSMUST00000126865 Sik3-001 46012820-46224194 protein_coding
  ENSMUST00000138338 Sik3-006 46219571-46221234 protein_coding
  ENSMUST00000153152 Sik3-003 46155379-46224188 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000120247ENSMUST00000120463ENSMUST00000122865ENSMUST00000126865ENSMUST00000153152
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000120247 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.126±0.00
ENSMUST00000120463 N/A N/A N/A N/A 0.852±0.00 1.231±0.00 N/A N/A N/A N/A N/A 2.454±0.00 1.371±0.00 4.995±1.67
ENSMUST00000122865 3.632±0.40 3.146±0.00 2.416±0.00 4.419±2.97 3.000±0.30 3.340±0.15 7.475±1.26 3.611±0.17 2.224±1.08 3.094±0.04 5.599±0.73 6.964±2.24 7.236±6.81 4.891±1.67
ENSMUST00000126865 4.207±1.55 8.317±3.56 2.726±1.69 6.202±3.55 2.160±1.12 6.499±1.94 3.952±0.83 9.420±0.62 2.287±0.79 5.808±2.03 3.711±0.95 5.189±2.27 4.608±2.31 3.732±1.63
ENSMUST00000153152 0.703±0.00 1.778±0.00 N/A 1.282±0.48 N/A N/A N/A N/A 0.537±0.33 N/A N/A 2.005±0.14 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RC CIL_0007RC_0002 VISTA 9:45818249-46421546

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000287 IEA magnesium ion binding
GO:0001958 IMP endochondral ossification
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0006468 IEA protein phosphorylation
GO:0032880 IMP regulation of protein localization
GO:0035108 IMP limb morphogenesis
GO:0035264 IMP multicellular organism growth
GO:0048705 IMP skeletal system morphogenesis
GO:0060351 IMP cartilage development involved in endochondral bone morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000088083 SIK3 SIK family kinase 3 protein_coding Danio_rerio
ENSG00000160584 SIK3 SIK family kinase 3 protein_coding Homo_sapiens

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