C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SIK family kinase 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000153152 Sik3-003 ENSMUSG00000034135 10090 + 9:46155379-46224188 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainLiverOvaryENSMUST00000153152
Transcript ID Adipose Adrenal Brain Liver Ovary
ENSMUST00000153152 0.703±0.00 1.778±0.00 1.282±0.48 0.537±0.33 2.005±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RC CIL_0007RC_0002 VISTA 9:45818249-46421546

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000122372 SIK3-201 protein_coding Danio_rerio 0 316
ENSDART00000129547 CABZ01087568.1-201 protein_coding Danio_rerio 0.000002 60
ENST00000375300 SIK3-001 protein_coding Homo_sapiens 0 2662
ENST00000413553 SIK3-003 protein_coding Homo_sapiens 0 1709
ENST00000415541 SIK3-013 nonsense_mediated_decay Homo_sapiens 0 3938
ENST00000445177 SIK3-002 protein_coding Homo_sapiens 0 1709
ENST00000446921 SIK3-014 protein_coding Homo_sapiens 0 2231
ENST00000465421 SIK3-005 retained_intron Homo_sapiens 0 2233
ENST00000472648 SIK3-010 retained_intron Homo_sapiens 0 267
ENST00000480222 SIK3-011 retained_intron Homo_sapiens 0 313
ENST00000480468 SIK3-006 retained_intron Homo_sapiens 0 754
ENST00000488337 SIK3-004 processed_transcript Homo_sapiens 0 1580
ENST00000497049 SIK3-008 processed_transcript Homo_sapiens 0 562

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